eF-site ID 1npx-A
PDB Code 1npx
Chain A

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Title STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED AT 2.16 ANGSTROMS RESOLUTION
Classification OXIDOREDUCTASE(H2O2(A))
Compound NADH PEROXIDASE
Source Enterococcus faecalis (Streptococcus faecalis) (NAPE_ENTFA)
Sequence A:  MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL
SXGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT
AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI
PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI
GIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEE
MEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV
AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVG
DATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPF
PGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE
DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTAN
INAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAAL
EAVKQER
Description (1)  NADH PEROXIDASE (E.C.1.11.1.1) NON-ACTIVE FORM WITH CYS 42 OXIDIZED TO A SULFONIC ACID (CYS42-SO3H)


Functional site

1) chain A
residue 9
type
sequence S
description
source : AC2

2) chain A
residue 10
type
sequence H
description
source : AC2

3) chain A
residue 11
type
sequence G
description
source : AC2

4) chain A
residue 32
type
sequence E
description
source : AC2

5) chain A
residue 33
type
sequence K
description
source : AC2

6) chain A
residue 79
type
sequence I
description
source : AC2

7) chain A
residue 110
type
sequence S
description
source : AC2

8) chain A
residue 111
type
sequence P
description
source : AC2

9) chain A
residue 112
type
sequence G
description
source : AC2

10) chain A
residue 113
type
sequence A
description
source : AC2

11) chain A
residue 132
type
sequence R
description
source : AC2

12) chain A
residue 159
type
sequence Y
description
source : AC2

13) chain A
residue 247
type
sequence N
description
source : AC2

14) chain A
residue 280
type
sequence G
description
source : AC2

15) chain A
residue 281
type
sequence D
description
source : AC2

16) chain A
residue 297
type
sequence A
description
source : AC2

17) chain A
residue 298
type
sequence L
description
source : AC2

18) chain A
residue 299
type
sequence A
description
source : AC2

19) chain A
residue 424
type
sequence F
description
source : AC2

20) chain A
residue 6
type
sequence L
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

21) chain A
residue 7
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

22) chain A
residue 9
type
sequence S
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

23) chain A
residue 10
type
sequence H
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

24) chain A
residue 11
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

25) chain A
residue 32
type
sequence E
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

26) chain A
residue 33
type
sequence K
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

27) chain A
residue 41
type
sequence S
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

28) chain A
residue 42
type
sequence X
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

29) chain A
residue 78
type
sequence E
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

30) chain A
residue 79
type
sequence I
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

31) chain A
residue 110
type
sequence S
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

32) chain A
residue 111
type
sequence P
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

33) chain A
residue 112
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

34) chain A
residue 113
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

35) chain A
residue 132
type
sequence R
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

36) chain A
residue 159
type
sequence Y
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

37) chain A
residue 160
type
sequence I
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

38) chain A
residue 247
type
sequence N
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

39) chain A
residue 280
type
sequence G
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

40) chain A
residue 281
type
sequence D
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

41) chain A
residue 297
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

42) chain A
residue 298
type
sequence L
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

43) chain A
residue 299
type
sequence A
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

44) chain A
residue 424
type
sequence F
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

45) chain A
residue 425
type
sequence Q
description BINDING SITE FOR RESIDUE FAD A 449
source : AC1

46) chain A
residue 10
type catalytic
sequence H
description 895
source MCSA : MCSA1

47) chain A
residue 41
type catalytic
sequence S
description 895
source MCSA : MCSA1

48) chain A
residue 42
type catalytic
sequence X
description 895
source MCSA : MCSA1

49) chain A
residue 303
type catalytic
sequence R
description 895
source MCSA : MCSA1

50) chain A
residue 10
type ACT_SITE
sequence H
description Proton acceptor => ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI1

51) chain A
residue 42
type ACT_SITE
sequence X
description Redox-active => ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI2

52) chain A
residue 7
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

53) chain A
residue 32
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

54) chain A
residue 42
type BINDING
sequence X
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

55) chain A
residue 110
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

56) chain A
residue 132
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

57) chain A
residue 281
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

58) chain A
residue 299
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI3

59) chain A
residue 160
type BINDING
sequence I
description BINDING => ECO:0000269|PubMed:8425532
source Swiss-Prot : SWS_FT_FI4

60) chain A
residue 179
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:8425532
source Swiss-Prot : SWS_FT_FI4

61) chain A
residue 188
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:8425532
source Swiss-Prot : SWS_FT_FI4

62) chain A
residue 243
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:8425532
source Swiss-Prot : SWS_FT_FI4

63) chain A
residue 297
type BINDING
sequence A
description BINDING => ECO:0000269|PubMed:8425532
source Swiss-Prot : SWS_FT_FI4

64) chain A
residue 328
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:8425532
source Swiss-Prot : SWS_FT_FI4

65) chain A
residue 42
type MOD_RES
sequence X
description Cysteine sulfenic acid (-SOH) => ECO:0000269|PubMed:8756456
source Swiss-Prot : SWS_FT_FI5


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