eF-site ID 1n34-ABCDEFGHIJKLMNOPQRSTVZ PDB Code 1n34 Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, V, Z click to enlarge Title Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position Classification RIBOSOME Compound 16S RIBOSOMAL RNA Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence A:  UGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCG UGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUAC UCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGA CCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCU AAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAG GGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCU AGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAG CCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACA CGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUC CGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAG GAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACG AAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGC GCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGG GCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUG UAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCA ACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGG GAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGC AGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUG GUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA ACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUG CGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACG CGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGA AACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAG CAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAG GCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUG CCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGU CGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAA CGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCG GGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGA GGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGC GACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACC CGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUC GGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCG CUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUC CCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGG GCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCG AGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUA GCUGUACCGGAAGGUGCGGCUGGAUCACUUUCU B:  VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQK TMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDD AIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ C:  GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRG LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG ERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVA EQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAE QARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY IFLGEV D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ LVIEFYSR E:  DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLG FGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEF GASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELG SRNPINIAYATMEALRQLRTKADVERLRKG F:  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKV EELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR IRDNVRRVMVVKSQEPFLANA G:  ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAAR IFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVG GANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIA HELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW H:  MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILA REGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVI HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT DREARKLGVGGELICEVW I:  EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLV RAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARR APQYSKR J:  KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT RVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI EQLMTLDLPTGVEIEIKT K:  KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGY KGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS L:  PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVT PKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK PKEA M:  ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINP ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAG N:  ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCR ICLRELAHKGQLPGVRKASW O:  PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE HLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRAL IEKLGIRG P:  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF RQE Q:  PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKK YLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR MDLVEKYLIRRQNYQSLSKRGGKA R:  PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRR TGLSGKEQRILAKTIKRARILGLLPFTEKLVRK S:  PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIV PEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYR T:  RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEG KAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK VRQLLEAAGAPLIGGGLSA V:  GKGDRRTRRGKIWRGTYGKYRPRK Z:  UUUU Description Functional site 1) chain D residue 9 type sequence C description BINDING SITE FOR RESIDUE ZN D 306 source : AC1 2) chain D residue 12 type sequence C description BINDING SITE FOR RESIDUE ZN D 306 source : AC1 3) chain D residue 19 type sequence L description BINDING SITE FOR RESIDUE ZN D 306 source : AC1 4) chain D residue 22 type sequence K description BINDING SITE FOR RESIDUE ZN D 306 source : AC1 5) chain D residue 26 type sequence C description BINDING SITE FOR RESIDUE ZN D 306 source : AC1 6) chain D residue 31 type sequence C description BINDING SITE FOR RESIDUE ZN D 306 source : AC1 7) chain A residue 1202 type sequence G description BINDING SITE FOR RESIDUE ZN N 307 source : AC2 8) chain N residue 24 type sequence C description BINDING SITE FOR RESIDUE ZN N 307 source : AC2 9) chain N residue 27 type sequence C description BINDING SITE FOR RESIDUE ZN N 307 source : AC2 10) chain N residue 40 type sequence C description BINDING SITE FOR RESIDUE ZN N 307 source : AC2 11) chain N residue 43 type sequence C description BINDING SITE FOR RESIDUE ZN N 307 source : AC2 12) chain J residue 27-42 type prosite sequence ARRSGAQVSGPIPLPT description RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT source prosite : PS00361 13) chain N residue 23-45 type prosite sequence RCVRCGRARSVYRFFGLCRICLR description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR source prosite : PS00527 14) chain N residue 25 type BINDING sequence V description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 15) chain N residue 28 type BINDING sequence G description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 16) chain N residue 41 type BINDING sequence R description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 17) chain N residue 44 type BINDING sequence L description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 97-121 type prosite sequence LESRLDNVVYRLGFAVSRRQARQLV description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV source prosite : PS00632 19) chain H residue 108-125 type prosite sequence GIAILSTSKGVLTDREAR description RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR source prosite : PS00053 20) chain C residue 163-197 type prosite sequence ARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLG description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG source prosite : PS00548 21) chain F residue 44-53 type prosite sequence GLRRLAYPIA description RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA source prosite : PS01048 22) chain G residue 20-46 type prosite sequence DVLVTAFINKIMRDGKKNLAARIFYDA description RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA source prosite : PS00052 23) chain I residue 67-85 type prosite sequence GGGKSGQIDAIKLGIARAL description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL source prosite : PS00360 24) chain O residue 39-69 type prosite sequence LSEHLKVHKKDHHSHRGLLMMVGQRRRLLRY description RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY source prosite : PS00362 25) chain Q residue 54-66 type prosite sequence GDVVEIIESRPIS description RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS source prosite : PS00056 26) chain K residue 95-117 type prosite sequence IRALQASGLQVKSIVDDTPVPHN description RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN source prosite : PS00054 27) chain S residue 53-77 type prosite sequence NGKQHVPVYITENMVGHKLGEFAPT description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT source prosite : PS00323 28) chain E residue 23-55 type prosite sequence GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAV description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV source prosite : PS00585 29) chain B residue 7-18 type prosite sequence VKELLEAGVHFG description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG source prosite : PS00962 30) chain L residue 46-53 type prosite sequence KKPNSALR description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR source prosite : PS00055 31) chain R residue 32-55 type prosite sequence RDYRNVEVLKRFLSETGKILPRRR description RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR source prosite : PS00057 32) chain R residue 66-81 type prosite sequence LAKTIKRARILGLLPF description ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF source prosite : PS00063 33) chain M residue 88-101 type prosite sequence RGLRHRRGLPVRGQ description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ source prosite : PS00646

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