eF-site ID 1n32-D
PDB Code 1n32
Chain D

click to enlarge
Title Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Classification RIBOSOME
Compound 16S RIBOSOMAL RNA
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG
QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE
ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV
RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN
LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR
Description (1)  30S Ribosomal Subunit


Functional site

1) chain D
residue 82
type
sequence A
description BINDING SITE FOR RESIDUE MG D 215
source : GC2

2) chain D
residue 83
type
sequence S
description BINDING SITE FOR RESIDUE MG D 215
source : GC2

3) chain D
residue 85
type
sequence K
description BINDING SITE FOR RESIDUE MG D 215
source : GC2

4) chain D
residue 87
type
sequence G
description BINDING SITE FOR RESIDUE MG D 215
source : GC2

5) chain D
residue 89
type
sequence T
description BINDING SITE FOR RESIDUE MG D 215
source : GC2

6) chain D
residue 9
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 306
source : PC3

7) chain D
residue 12
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 306
source : PC3

8) chain D
residue 19
type
sequence L
description BINDING SITE FOR RESIDUE ZN D 306
source : PC3

9) chain D
residue 26
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 306
source : PC3

10) chain D
residue 31
type
sequence C
description BINDING SITE FOR RESIDUE ZN D 306
source : PC3

11) chain D
residue 97-121
type prosite
sequence LESRLDNVVYRLGFAVSRRQARQLV
description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
source prosite : PS00632


Display surface

Download
Links