eF-site ID 1mfs_25-A
PDB Code 1mfs
Model 25
Chain A

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Title DYNAMICAL BEHAVIOR OF THE HIV-1 NUCLEOCAPSID PROTEIN; NMR, 30 STRUCTURES
Classification VIRAL PROTEIN
Compound HIV-1 NUCLEOCAPSID PROTEIN
Source Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1) (POL_HV1Y2)
Sequence A:  MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCG
KEGHQMKDCTERQAN
Description (1)  HIV-1 NUCLEOCAPSID PROTEIN


Functional site

1) chain A
residue 15
type
sequence C
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

2) chain A
residue 18
type
sequence C
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

3) chain A
residue 23
type
sequence H
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

4) chain A
residue 28
type
sequence C
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

5) chain A
residue 36
type
sequence C
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

6) chain A
residue 39
type
sequence C
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

7) chain A
residue 44
type
sequence H
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

8) chain A
residue 49
type
sequence C
description THESE 4 RESIDUES ARE THE ZINC BINDING LIGANDS OF THE SECOND ZINC FINGER DOMAIN OF P7.
source : MNG

9) chain A
residue 15
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 56
source : AC1

10) chain A
residue 18
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 56
source : AC1

11) chain A
residue 23
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 56
source : AC1

12) chain A
residue 28
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 56
source : AC1

13) chain A
residue 36
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 57
source : AC2

14) chain A
residue 39
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 57
source : AC2

15) chain A
residue 44
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 57
source : AC2

16) chain A
residue 49
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 57
source : AC2

17) chain A
residue 14-31
type ZN_FING
sequence KCFNCGKEGHIAKNCRAP
description CCHC-type 1 => ECO:0000255|PROSITE-ProRule:PRU00047
source Swiss-Prot : SWS_FT_FI1

18) chain A
residue 35-52
type ZN_FING
sequence GCWKCGKEGHQMKDCTER
description CCHC-type 2 => ECO:0000255|PROSITE-ProRule:PRU00047
source Swiss-Prot : SWS_FT_FI2

19) chain A
residue 1
type SITE
sequence M
description Cleavage; by viral protease => ECO:0000250
source Swiss-Prot : SWS_FT_FI3


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