|
|
eF-site ID
|
1m8v-E |
|
PDB Code
|
1m8v |
|
Chain
|
E |
|
click to enlarge
|
|
|
Title
|
Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer |
|
Classification
|
RNA BINDING PROTEIN/RNA |
|
Compound
|
5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' |
|
Source
|
Pyrococcus abyssi (strain GE5 / Orsay) (1M8V) |
|
|
Sequence
|
E: |
ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
E |
| residue |
563 |
| type |
|
| sequence |
R
|
| description |
BINDING SITE FOR RESIDUE U D 476
|
| source |
: BC2
|
|
|
2)
|
chain |
E |
| residue |
539 |
| type |
|
| sequence |
N
|
| description |
BINDING SITE FOR RESIDUE U E 414
|
| source |
: BC3
|
|
|
3)
|
chain |
E |
| residue |
563 |
| type |
|
| sequence |
R
|
| description |
BINDING SITE FOR RESIDUE U E 414
|
| source |
: BC3
|
|
|
4)
|
chain |
E |
| residue |
565 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE U E 414
|
| source |
: BC3
|
|
|
5)
|
chain |
E |
| residue |
537 |
| type |
|
| sequence |
H
|
| description |
BINDING SITE FOR RESIDUE U F 415
|
| source |
: BC4
|
|
|
6)
|
chain |
E |
| residue |
538 |
| type |
|
| sequence |
L
|
| description |
BINDING SITE FOR RESIDUE U F 415
|
| source |
: BC4
|
|
|
|