|
|
eF-site ID
|
1m8v-C |
|
PDB Code
|
1m8v |
|
Chain
|
C |
|
click to enlarge
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Title
|
Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer |
|
Classification
|
RNA BINDING PROTEIN/RNA |
|
Compound
|
5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' |
|
Source
|
Pyrococcus abyssi (strain GE5 / Orsay) (1M8V) |
|
|
Sequence
|
C: |
ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
|
|
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Description
|
|
Functional site
|
|
|
1)
|
chain |
C |
| residue |
337 |
| type |
|
| sequence |
H
|
| description |
BINDING SITE FOR RESIDUE U C 412
|
| source |
: BC1
|
|
|
2)
|
chain |
C |
| residue |
339 |
| type |
|
| sequence |
N
|
| description |
BINDING SITE FOR RESIDUE U C 412
|
| source |
: BC1
|
|
|
3)
|
chain |
C |
| residue |
363 |
| type |
|
| sequence |
R
|
| description |
BINDING SITE FOR RESIDUE U C 412
|
| source |
: BC1
|
|
|
4)
|
chain |
C |
| residue |
364 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE U C 412
|
| source |
: BC1
|
|
|
5)
|
chain |
C |
| residue |
365 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE U C 412
|
| source |
: BC1
|
|
|
6)
|
chain |
C |
| residue |
338 |
| type |
|
| sequence |
L
|
| description |
BINDING SITE FOR RESIDUE U D 476
|
| source |
: BC2
|
|
|
|