eF-site ID 1m8v-ABCDEFGHIJKLMNOPQRSTU
PDB Code 1m8v
Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U

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Title Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer
Classification RNA BINDING PROTEIN/RNA
Compound 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3'
Source Pyrococcus abyssi (strain GE5 / Orsay) (1M8V)
Sequence A:  AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVV
LADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
B:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
C:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
D:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
E:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
F:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
G:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
H:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
I:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
J:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
K:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
L:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
M:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
N:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL
ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT
O:  UUUUUU
P:  UUUUUU
Q:  UUUUUU
R:  UUUUUU
S:  UUUUUU
T:  UUUUU
U:  UUUUUU
Description


Functional site

1) chain O
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA O 310
source : AC1

2) chain O
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA O 310
source : AC1

3) chain O
residue 4
type
sequence U
description BINDING SITE FOR RESIDUE CA O 310
source : AC1

4) chain O
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA O 310
source : AC1

5) chain O
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE CA O 310
source : AC1

6) chain T
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA T 320
source : AC2

7) chain T
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA T 320
source : AC2

8) chain T
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA T 320
source : AC2

9) chain P
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA P 330
source : AC3

10) chain P
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA P 330
source : AC3

11) chain P
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA P 330
source : AC3

12) chain P
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE CA P 330
source : AC3

13) chain S
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA S 340
source : AC4

14) chain S
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA S 340
source : AC4

15) chain S
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA S 340
source : AC4

16) chain S
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE CA S 340
source : AC4

17) chain U
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA U 370
source : AC5

18) chain U
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA U 370
source : AC5

19) chain U
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA U 370
source : AC5

20) chain U
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE CA U 370
source : AC5

21) chain Q
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA Q 380
source : AC6

22) chain Q
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA Q 380
source : AC6

23) chain Q
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA Q 380
source : AC6

24) chain Q
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE CA Q 380
source : AC6

25) chain R
residue 2
type
sequence U
description BINDING SITE FOR RESIDUE CA R 390
source : AC7

26) chain R
residue 3
type
sequence U
description BINDING SITE FOR RESIDUE CA R 390
source : AC7

27) chain R
residue 5
type
sequence U
description BINDING SITE FOR RESIDUE CA R 390
source : AC7

28) chain R
residue 6
type
sequence U
description BINDING SITE FOR RESIDUE CA R 390
source : AC7

29) chain A
residue 137
type
sequence H
description BINDING SITE FOR RESIDUE U A 410
source : AC8

30) chain A
residue 139
type
sequence N
description BINDING SITE FOR RESIDUE U A 410
source : AC8

31) chain A
residue 163
type
sequence R
description BINDING SITE FOR RESIDUE U A 410
source : AC8

32) chain A
residue 164
type
sequence G
description BINDING SITE FOR RESIDUE U A 410
source : AC8

33) chain A
residue 165
type
sequence D
description BINDING SITE FOR RESIDUE U A 410
source : AC8

34) chain B
residue 263
type
sequence R
description BINDING SITE FOR RESIDUE U A 410
source : AC8

35) chain G
residue 738
type
sequence L
description BINDING SITE FOR RESIDUE U A 410
source : AC8

36) chain A
residue 138
type
sequence L
description BINDING SITE FOR RESIDUE U B 411
source : AC9

37) chain B
residue 237
type
sequence H
description BINDING SITE FOR RESIDUE U B 411
source : AC9

38) chain B
residue 239
type
sequence N
description BINDING SITE FOR RESIDUE U B 411
source : AC9

39) chain B
residue 263
type
sequence R
description BINDING SITE FOR RESIDUE U B 411
source : AC9

40) chain B
residue 264
type
sequence G
description BINDING SITE FOR RESIDUE U B 411
source : AC9

41) chain B
residue 265
type
sequence D
description BINDING SITE FOR RESIDUE U B 411
source : AC9

42) chain B
residue 236
type
sequence I
description BINDING SITE FOR RESIDUE U C 412
source : BC1

43) chain B
residue 238
type
sequence L
description BINDING SITE FOR RESIDUE U C 412
source : BC1

44) chain C
residue 337
type
sequence H
description BINDING SITE FOR RESIDUE U C 412
source : BC1

45) chain C
residue 339
type
sequence N
description BINDING SITE FOR RESIDUE U C 412
source : BC1

46) chain C
residue 363
type
sequence R
description BINDING SITE FOR RESIDUE U C 412
source : BC1

47) chain C
residue 364
type
sequence G
description BINDING SITE FOR RESIDUE U C 412
source : BC1

48) chain C
residue 365
type
sequence D
description BINDING SITE FOR RESIDUE U C 412
source : BC1

49) chain D
residue 463
type
sequence R
description BINDING SITE FOR RESIDUE U C 412
source : BC1

50) chain C
residue 338
type
sequence L
description BINDING SITE FOR RESIDUE U D 476
source : BC2

51) chain D
residue 437
type
sequence H
description BINDING SITE FOR RESIDUE U D 476
source : BC2

52) chain D
residue 439
type
sequence N
description BINDING SITE FOR RESIDUE U D 476
source : BC2

53) chain D
residue 463
type
sequence R
description BINDING SITE FOR RESIDUE U D 476
source : BC2

54) chain D
residue 464
type
sequence G
description BINDING SITE FOR RESIDUE U D 476
source : BC2

55) chain D
residue 465
type
sequence D
description BINDING SITE FOR RESIDUE U D 476
source : BC2

56) chain E
residue 563
type
sequence R
description BINDING SITE FOR RESIDUE U D 476
source : BC2

57) chain D
residue 437
type
sequence H
description BINDING SITE FOR RESIDUE U E 414
source : BC3

58) chain D
residue 438
type
sequence L
description BINDING SITE FOR RESIDUE U E 414
source : BC3

59) chain E
residue 539
type
sequence N
description BINDING SITE FOR RESIDUE U E 414
source : BC3

60) chain E
residue 563
type
sequence R
description BINDING SITE FOR RESIDUE U E 414
source : BC3

61) chain E
residue 565
type
sequence D
description BINDING SITE FOR RESIDUE U E 414
source : BC3

62) chain F
residue 663
type
sequence R
description BINDING SITE FOR RESIDUE U E 414
source : BC3

63) chain E
residue 537
type
sequence H
description BINDING SITE FOR RESIDUE U F 415
source : BC4

64) chain E
residue 538
type
sequence L
description BINDING SITE FOR RESIDUE U F 415
source : BC4

65) chain F
residue 637
type
sequence H
description BINDING SITE FOR RESIDUE U F 415
source : BC4

66) chain F
residue 639
type
sequence N
description BINDING SITE FOR RESIDUE U F 415
source : BC4

67) chain F
residue 663
type
sequence R
description BINDING SITE FOR RESIDUE U F 415
source : BC4

68) chain F
residue 664
type
sequence G
description BINDING SITE FOR RESIDUE U F 415
source : BC4

69) chain F
residue 665
type
sequence D
description BINDING SITE FOR RESIDUE U F 415
source : BC4

70) chain G
residue 763
type
sequence R
description BINDING SITE FOR RESIDUE U F 415
source : BC4

71) chain F
residue 638
type
sequence L
description BINDING SITE FOR RESIDUE U G 416
source : BC5

72) chain G
residue 737
type
sequence H
description BINDING SITE FOR RESIDUE U G 416
source : BC5

73) chain G
residue 739
type
sequence N
description BINDING SITE FOR RESIDUE U G 416
source : BC5

74) chain G
residue 763
type
sequence R
description BINDING SITE FOR RESIDUE U G 416
source : BC5

75) chain G
residue 765
type
sequence D
description BINDING SITE FOR RESIDUE U G 416
source : BC5

76) chain H
residue 137
type
sequence H
description BINDING SITE FOR RESIDUE U H 417
source : BC6

77) chain H
residue 139
type
sequence N
description BINDING SITE FOR RESIDUE U H 417
source : BC6

78) chain H
residue 163
type
sequence R
description BINDING SITE FOR RESIDUE U H 417
source : BC6

79) chain H
residue 165
type
sequence D
description BINDING SITE FOR RESIDUE U H 417
source : BC6

80) chain I
residue 263
type
sequence R
description BINDING SITE FOR RESIDUE U H 417
source : BC6

81) chain N
residue 738
type
sequence L
description BINDING SITE FOR RESIDUE U H 417
source : BC6

82) chain H
residue 138
type
sequence L
description BINDING SITE FOR RESIDUE U I 418
source : BC7

83) chain I
residue 237
type
sequence H
description BINDING SITE FOR RESIDUE U I 418
source : BC7

84) chain I
residue 239
type
sequence N
description BINDING SITE FOR RESIDUE U I 418
source : BC7

85) chain I
residue 263
type
sequence R
description BINDING SITE FOR RESIDUE U I 418
source : BC7

86) chain I
residue 265
type
sequence D
description BINDING SITE FOR RESIDUE U I 418
source : BC7

87) chain J
residue 363
type
sequence R
description BINDING SITE FOR RESIDUE U I 418
source : BC7

88) chain I
residue 238
type
sequence L
description BINDING SITE FOR RESIDUE U J 419
source : BC8

89) chain J
residue 339
type
sequence N
description BINDING SITE FOR RESIDUE U J 419
source : BC8

90) chain J
residue 363
type
sequence R
description BINDING SITE FOR RESIDUE U J 419
source : BC8

91) chain J
residue 364
type
sequence G
description BINDING SITE FOR RESIDUE U J 419
source : BC8

92) chain J
residue 365
type
sequence D
description BINDING SITE FOR RESIDUE U J 419
source : BC8

93) chain K
residue 463
type
sequence R
description BINDING SITE FOR RESIDUE U J 419
source : BC8

94) chain J
residue 338
type
sequence L
description BINDING SITE FOR RESIDUE U K 476
source : BC9

95) chain K
residue 437
type
sequence H
description BINDING SITE FOR RESIDUE U K 476
source : BC9

96) chain K
residue 439
type
sequence N
description BINDING SITE FOR RESIDUE U K 476
source : BC9

97) chain K
residue 463
type
sequence R
description BINDING SITE FOR RESIDUE U K 476
source : BC9

98) chain K
residue 464
type
sequence G
description BINDING SITE FOR RESIDUE U K 476
source : BC9

99) chain K
residue 465
type
sequence D
description BINDING SITE FOR RESIDUE U K 476
source : BC9

100) chain L
residue 563
type
sequence R
description BINDING SITE FOR RESIDUE U K 476
source : BC9

101) chain K
residue 437
type
sequence H
description BINDING SITE FOR RESIDUE U L 421
source : CC1

102) chain K
residue 438
type
sequence L
description BINDING SITE FOR RESIDUE U L 421
source : CC1

103) chain L
residue 537
type
sequence H
description BINDING SITE FOR RESIDUE U L 421
source : CC1

104) chain L
residue 539
type
sequence N
description BINDING SITE FOR RESIDUE U L 421
source : CC1

105) chain L
residue 563
type
sequence R
description BINDING SITE FOR RESIDUE U L 421
source : CC1

106) chain L
residue 565
type
sequence D
description BINDING SITE FOR RESIDUE U L 421
source : CC1

107) chain M
residue 663
type
sequence R
description BINDING SITE FOR RESIDUE U L 421
source : CC1

108) chain L
residue 538
type
sequence L
description BINDING SITE FOR RESIDUE U M 422
source : CC2

109) chain M
residue 637
type
sequence H
description BINDING SITE FOR RESIDUE U M 422
source : CC2

110) chain M
residue 639
type
sequence N
description BINDING SITE FOR RESIDUE U M 422
source : CC2

111) chain M
residue 663
type
sequence R
description BINDING SITE FOR RESIDUE U M 422
source : CC2

112) chain M
residue 665
type
sequence D
description BINDING SITE FOR RESIDUE U M 422
source : CC2

113) chain M
residue 622
type
sequence K
description BINDING SITE FOR RESIDUE U M 423
source : CC3

114) chain M
residue 638
type
sequence L
description BINDING SITE FOR RESIDUE U M 423
source : CC3

115) chain M
residue 665
type
sequence D
description BINDING SITE FOR RESIDUE U M 423
source : CC3

116) chain N
residue 737
type
sequence H
description BINDING SITE FOR RESIDUE U M 423
source : CC3

117) chain N
residue 739
type
sequence N
description BINDING SITE FOR RESIDUE U M 423
source : CC3

118) chain N
residue 763
type
sequence R
description BINDING SITE FOR RESIDUE U M 423
source : CC3

119) chain N
residue 765
type
sequence D
description BINDING SITE FOR RESIDUE U M 423
source : CC3


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