eF-site ID 1m8v-ABCDEFGHIJKLMN PDB Code 1m8v Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N click to enlarge Title Structure of Pyrococcus abyssii Sm Protein in Complex with a Uridine Heptamer Classification RNA BINDING PROTEIN/RNA Compound 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' Source Pyrococcus abyssi (strain GE5 / Orsay) (1M8V) Sequence A:  AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVV LADAEMIQDGEVVKRYGKIVIRGDNVLAISPT B:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT C:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT D:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT E:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT F:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT G:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT H:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT I:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT J:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT K:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT L:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT M:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT N:  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVL ADAEMIQDGEVVKRYGKIVIRGDNVLAISPT Description Functional site 1) chain A residue 137 type sequence H description BINDING SITE FOR RESIDUE U A 410 source : AC8 2) chain A residue 139 type sequence N description BINDING SITE FOR RESIDUE U A 410 source : AC8 3) chain A residue 163 type sequence R description BINDING SITE FOR RESIDUE U A 410 source : AC8 4) chain A residue 164 type sequence G description BINDING SITE FOR RESIDUE U A 410 source : AC8 5) chain A residue 165 type sequence D description BINDING SITE FOR RESIDUE U A 410 source : AC8 6) chain B residue 263 type sequence R description BINDING SITE FOR RESIDUE U A 410 source : AC8 7) chain G residue 738 type sequence L description BINDING SITE FOR RESIDUE U A 410 source : AC8 8) chain A residue 138 type sequence L description BINDING SITE FOR RESIDUE U B 411 source : AC9 9) chain B residue 237 type sequence H description BINDING SITE FOR RESIDUE U B 411 source : AC9 10) chain B residue 239 type sequence N description BINDING SITE FOR RESIDUE U B 411 source : AC9 11) chain B residue 263 type sequence R description BINDING SITE FOR RESIDUE U B 411 source : AC9 12) chain B residue 264 type sequence G description BINDING SITE FOR RESIDUE U B 411 source : AC9 13) chain B residue 265 type sequence D description BINDING SITE FOR RESIDUE U B 411 source : AC9 14) chain B residue 236 type sequence I description BINDING SITE FOR RESIDUE U C 412 source : BC1 15) chain B residue 238 type sequence L description BINDING SITE FOR RESIDUE U C 412 source : BC1 16) chain C residue 337 type sequence H description BINDING SITE FOR RESIDUE U C 412 source : BC1 17) chain C residue 339 type sequence N description BINDING SITE FOR RESIDUE U C 412 source : BC1 18) chain C residue 363 type sequence R description BINDING SITE FOR RESIDUE U C 412 source : BC1 19) chain C residue 364 type sequence G description BINDING SITE FOR RESIDUE U C 412 source : BC1 20) chain C residue 365 type sequence D description BINDING SITE FOR RESIDUE U C 412 source : BC1 21) chain D residue 463 type sequence R description BINDING SITE FOR RESIDUE U C 412 source : BC1 22) chain C residue 338 type sequence L description BINDING SITE FOR RESIDUE U D 476 source : BC2 23) chain D residue 437 type sequence H description BINDING SITE FOR RESIDUE U D 476 source : BC2 24) chain D residue 439 type sequence N description BINDING SITE FOR RESIDUE U D 476 source : BC2 25) chain D residue 463 type sequence R description BINDING SITE FOR RESIDUE U D 476 source : BC2 26) chain D residue 464 type sequence G description BINDING SITE FOR RESIDUE U D 476 source : BC2 27) chain D residue 465 type sequence D description BINDING SITE FOR RESIDUE U D 476 source : BC2 28) chain E residue 563 type sequence R description BINDING SITE FOR RESIDUE U D 476 source : BC2 29) chain D residue 437 type sequence H description BINDING SITE FOR RESIDUE U E 414 source : BC3 30) chain D residue 438 type sequence L description BINDING SITE FOR RESIDUE U E 414 source : BC3 31) chain E residue 539 type sequence N description BINDING SITE FOR RESIDUE U E 414 source : BC3 32) chain E residue 563 type sequence R description BINDING SITE FOR RESIDUE U E 414 source : BC3 33) chain E residue 565 type sequence D description BINDING SITE FOR RESIDUE U E 414 source : BC3 34) chain F residue 663 type sequence R description BINDING SITE FOR RESIDUE U E 414 source : BC3 35) chain E residue 537 type sequence H description BINDING SITE FOR RESIDUE U F 415 source : BC4 36) chain E residue 538 type sequence L description BINDING SITE FOR RESIDUE U F 415 source : BC4 37) chain F residue 637 type sequence H description BINDING SITE FOR RESIDUE U F 415 source : BC4 38) chain F residue 639 type sequence N description BINDING SITE FOR RESIDUE U F 415 source : BC4 39) chain F residue 663 type sequence R description BINDING SITE FOR RESIDUE U F 415 source : BC4 40) chain F residue 664 type sequence G description BINDING SITE FOR RESIDUE U F 415 source : BC4 41) chain F residue 665 type sequence D description BINDING SITE FOR RESIDUE U F 415 source : BC4 42) chain G residue 763 type sequence R description BINDING SITE FOR RESIDUE U F 415 source : BC4 43) chain F residue 638 type sequence L description BINDING SITE FOR RESIDUE U G 416 source : BC5 44) chain G residue 737 type sequence H description BINDING SITE FOR RESIDUE U G 416 source : BC5 45) chain G residue 739 type sequence N description BINDING SITE FOR RESIDUE U G 416 source : BC5 46) chain G residue 763 type sequence R description BINDING SITE FOR RESIDUE U G 416 source : BC5 47) chain G residue 765 type sequence D description BINDING SITE FOR RESIDUE U G 416 source : BC5 48) chain H residue 137 type sequence H description BINDING SITE FOR RESIDUE U H 417 source : BC6 49) chain H residue 139 type sequence N description BINDING SITE FOR RESIDUE U H 417 source : BC6 50) chain H residue 163 type sequence R description BINDING SITE FOR RESIDUE U H 417 source : BC6 51) chain H residue 165 type sequence D description BINDING SITE FOR RESIDUE U H 417 source : BC6 52) chain I residue 263 type sequence R description BINDING SITE FOR RESIDUE U H 417 source : BC6 53) chain N residue 738 type sequence L description BINDING SITE FOR RESIDUE U H 417 source : BC6 54) chain H residue 138 type sequence L description BINDING SITE FOR RESIDUE U I 418 source : BC7 55) chain I residue 237 type sequence H description BINDING SITE FOR RESIDUE U I 418 source : BC7 56) chain I residue 239 type sequence N description BINDING SITE FOR RESIDUE U I 418 source : BC7 57) chain I residue 263 type sequence R description BINDING SITE FOR RESIDUE U I 418 source : BC7 58) chain I residue 265 type sequence D description BINDING SITE FOR RESIDUE U I 418 source : BC7 59) chain J residue 363 type sequence R description BINDING SITE FOR RESIDUE U I 418 source : BC7 60) chain I residue 238 type sequence L description BINDING SITE FOR RESIDUE U J 419 source : BC8 61) chain J residue 339 type sequence N description BINDING SITE FOR RESIDUE U J 419 source : BC8 62) chain J residue 363 type sequence R description BINDING SITE FOR RESIDUE U J 419 source : BC8 63) chain J residue 364 type sequence G description BINDING SITE FOR RESIDUE U J 419 source : BC8 64) chain J residue 365 type sequence D description BINDING SITE FOR RESIDUE U J 419 source : BC8 65) chain K residue 463 type sequence R description BINDING SITE FOR RESIDUE U J 419 source : BC8 66) chain J residue 338 type sequence L description BINDING SITE FOR RESIDUE U K 476 source : BC9 67) chain K residue 437 type sequence H description BINDING SITE FOR RESIDUE U K 476 source : BC9 68) chain K residue 439 type sequence N description BINDING SITE FOR RESIDUE U K 476 source : BC9 69) chain K residue 463 type sequence R description BINDING SITE FOR RESIDUE U K 476 source : BC9 70) chain K residue 464 type sequence G description BINDING SITE FOR RESIDUE U K 476 source : BC9 71) chain K residue 465 type sequence D description BINDING SITE FOR RESIDUE U K 476 source : BC9 72) chain L residue 563 type sequence R description BINDING SITE FOR RESIDUE U K 476 source : BC9 73) chain K residue 437 type sequence H description BINDING SITE FOR RESIDUE U L 421 source : CC1 74) chain K residue 438 type sequence L description BINDING SITE FOR RESIDUE U L 421 source : CC1 75) chain L residue 537 type sequence H description BINDING SITE FOR RESIDUE U L 421 source : CC1 76) chain L residue 539 type sequence N description BINDING SITE FOR RESIDUE U L 421 source : CC1 77) chain L residue 563 type sequence R description BINDING SITE FOR RESIDUE U L 421 source : CC1 78) chain L residue 565 type sequence D description BINDING SITE FOR RESIDUE U L 421 source : CC1 79) chain M residue 663 type sequence R description BINDING SITE FOR RESIDUE U L 421 source : CC1 80) chain L residue 538 type sequence L description BINDING SITE FOR RESIDUE U M 422 source : CC2 81) chain M residue 637 type sequence H description BINDING SITE FOR RESIDUE U M 422 source : CC2 82) chain M residue 639 type sequence N description BINDING SITE FOR RESIDUE U M 422 source : CC2 83) chain M residue 663 type sequence R description BINDING SITE FOR RESIDUE U M 422 source : CC2 84) chain M residue 665 type sequence D description BINDING SITE FOR RESIDUE U M 422 source : CC2 85) chain M residue 622 type sequence K description BINDING SITE FOR RESIDUE U M 423 source : CC3 86) chain M residue 638 type sequence L description BINDING SITE FOR RESIDUE U M 423 source : CC3 87) chain M residue 665 type sequence D description BINDING SITE FOR RESIDUE U M 423 source : CC3 88) chain N residue 737 type sequence H description BINDING SITE FOR RESIDUE U M 423 source : CC3 89) chain N residue 739 type sequence N description BINDING SITE FOR RESIDUE U M 423 source : CC3 90) chain N residue 763 type sequence R description BINDING SITE FOR RESIDUE U M 423 source : CC3 91) chain N residue 765 type sequence D description BINDING SITE FOR RESIDUE U M 423 source : CC3

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