eF-site ID 1loj-J
PDB Code 1loj
Chain J

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Title Crystal structure of a Methanobacterial Sm-like archaeal protein (SmAP1) bound to uridine-5'-monophosphate (UMP)
Classification RNA BINDING PROTEIN, transcription
Compound small nuclear ribonucleoprotein homolog (Sm-like)
Source Methanobacterium thermoautotrophicum (strain Delta H) (RUXX_METTH)
Sequence J:  VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLV
LNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKLAA
Description


Functional site

1) chain J
residue 46
type
sequence H
description BINDING SITE FOR RESIDUE URI J 9001
source : AC1

2) chain J
residue 48
type
sequence N
description BINDING SITE FOR RESIDUE URI J 9001
source : AC1

3) chain J
residue 72
type
sequence R
description BINDING SITE FOR RESIDUE URI J 9001
source : AC1

4) chain J
residue 73
type
sequence G
description BINDING SITE FOR RESIDUE URI J 9001
source : AC1

5) chain J
residue 74
type
sequence D
description BINDING SITE FOR RESIDUE URI J 9001
source : AC1

6) chain J
residue 72
type
sequence R
description BINDING SITE FOR RESIDUE U I 9002
source : AC2

7) chain J
residue 45
type
sequence L
description BINDING SITE FOR RESIDUE U K 9014
source : BC5

8) chain J
residue 46
type
sequence H
description BINDING SITE FOR RESIDUE U K 9014
source : BC5

9) chain J
residue 47
type
sequence M
description BINDING SITE FOR RESIDUE U K 9014
source : BC5

10) chain J
residue 17
type
sequence A
description BINDING SITE FOR RESIDUE MPD J 7001
source : BC6

11) chain J
residue 18
type
sequence L
description BINDING SITE FOR RESIDUE MPD J 7001
source : BC6

12) chain J
residue 21
type
sequence S
description BINDING SITE FOR RESIDUE MPD J 7001
source : BC6

13) chain J
residue 79
type
sequence I
description BINDING SITE FOR RESIDUE MPD J 7001
source : BC6

14) chain J
residue 81
type
sequence R
description BINDING SITE FOR RESIDUE MPD J 7001
source : BC6

15) chain J
residue 68
type
sequence T
description BINDING SITE FOR RESIDUE MPD I 7014
source : DC1


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