eF-site ID 1loj-ABCDEFGHIJKLMN PDB Code 1loj Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N click to enlarge Title Crystal structure of a Methanobacterial Sm-like archaeal protein (SmAP1) bound to uridine-5'-monophosphate (UMP) Classification RNA BINDING PROTEIN, transcription Compound small nuclear ribonucleoprotein homolog (Sm-like) Source null (RUXX_METTH) Sequence A:  VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMN LVLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKL B:  VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLV LNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKLAA C:  VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLV LNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKLAAA D:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK E:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKL F:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKL G:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKL H:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKLA I:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK J:  VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLV LNDAEELEDGEVTRRLGTVLIRGDNIVYISRGKLAA K:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISR L:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK M:  VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLV LNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK N:  NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL VLNDAEELEDGEVTRRLGTVLIRGDNIVYISRGK Description Functional site 1) chain J residue 46 type sequence H description BINDING SITE FOR RESIDUE URI J 9001 source : AC1 2) chain J residue 48 type sequence N description BINDING SITE FOR RESIDUE URI J 9001 source : AC1 3) chain J residue 72 type sequence R description BINDING SITE FOR RESIDUE URI J 9001 source : AC1 4) chain J residue 73 type sequence G description BINDING SITE FOR RESIDUE URI J 9001 source : AC1 5) chain J residue 74 type sequence D description BINDING SITE FOR RESIDUE URI J 9001 source : AC1 6) chain K residue 72 type sequence R description BINDING SITE FOR RESIDUE URI J 9001 source : AC1 7) chain H residue 46 type sequence H description BINDING SITE FOR RESIDUE U I 9002 source : AC2 8) chain H residue 47 type sequence M description BINDING SITE FOR RESIDUE U I 9002 source : AC2 9) chain I residue 46 type sequence H description BINDING SITE FOR RESIDUE U I 9002 source : AC2 10) chain I residue 48 type sequence N description BINDING SITE FOR RESIDUE U I 9002 source : AC2 11) chain I residue 72 type sequence R description BINDING SITE FOR RESIDUE U I 9002 source : AC2 12) chain I residue 74 type sequence D description BINDING SITE FOR RESIDUE U I 9002 source : AC2 13) chain J residue 72 type sequence R description BINDING SITE FOR RESIDUE U I 9002 source : AC2 14) chain H residue 46 type sequence H description BINDING SITE FOR RESIDUE U H 9003 source : AC3 15) chain H residue 48 type sequence N description BINDING SITE FOR RESIDUE U H 9003 source : AC3 16) chain H residue 72 type sequence R description BINDING SITE FOR RESIDUE U H 9003 source : AC3 17) chain H residue 73 type sequence G description BINDING SITE FOR RESIDUE U H 9003 source : AC3 18) chain H residue 74 type sequence D description BINDING SITE FOR RESIDUE U H 9003 source : AC3 19) chain I residue 72 type sequence R description BINDING SITE FOR RESIDUE U H 9003 source : AC3 20) chain N residue 15 type sequence L description BINDING SITE FOR RESIDUE U H 9003 source : AC3 21) chain N residue 45 type sequence L description BINDING SITE FOR RESIDUE U H 9003 source : AC3 22) chain N residue 46 type sequence H description BINDING SITE FOR RESIDUE U H 9003 source : AC3 23) chain N residue 47 type sequence M description BINDING SITE FOR RESIDUE U H 9003 source : AC3 24) chain L residue 47 type sequence M description BINDING SITE FOR RESIDUE URI M 9004 source : AC4 25) chain M residue 48 type sequence N description BINDING SITE FOR RESIDUE URI M 9004 source : AC4 26) chain M residue 72 type sequence R description BINDING SITE FOR RESIDUE URI M 9004 source : AC4 27) chain M residue 73 type sequence G description BINDING SITE FOR RESIDUE URI M 9004 source : AC4 28) chain M residue 74 type sequence D description BINDING SITE FOR RESIDUE URI M 9004 source : AC4 29) chain K residue 47 type sequence M description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 30) chain L residue 46 type sequence H description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 31) chain L residue 48 type sequence N description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 32) chain L residue 72 type sequence R description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 33) chain L residue 73 type sequence G description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 34) chain L residue 74 type sequence D description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 35) chain M residue 72 type sequence R description BINDING SITE FOR RESIDUE URI L 9005 source : AC5 36) chain D residue 47 type sequence M description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 37) chain E residue 46 type sequence H description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 38) chain E residue 48 type sequence N description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 39) chain E residue 72 type sequence R description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 40) chain E residue 73 type sequence G description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 41) chain E residue 74 type sequence D description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 42) chain F residue 72 type sequence R description BINDING SITE FOR RESIDUE URI E 9006 source : AC6 43) chain A residue 45 type sequence L description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 44) chain A residue 47 type sequence M description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 45) chain B residue 46 type sequence H description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 46) chain B residue 48 type sequence N description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 47) chain B residue 72 type sequence R description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 48) chain B residue 73 type sequence G description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 49) chain B residue 74 type sequence D description BINDING SITE FOR RESIDUE URI B 9007 source : AC7 50) chain C residue 45 type sequence L description BINDING SITE FOR RESIDUE U D 9008 source : AC8 51) chain C residue 47 type sequence M description BINDING SITE FOR RESIDUE U D 9008 source : AC8 52) chain D residue 46 type sequence H description BINDING SITE FOR RESIDUE U D 9008 source : AC8 53) chain D residue 48 type sequence N description BINDING SITE FOR RESIDUE U D 9008 source : AC8 54) chain D residue 72 type sequence R description BINDING SITE FOR RESIDUE U D 9008 source : AC8 55) chain D residue 73 type sequence G description BINDING SITE FOR RESIDUE U D 9008 source : AC8 56) chain D residue 74 type sequence D description BINDING SITE FOR RESIDUE U D 9008 source : AC8 57) chain E residue 72 type sequence R description BINDING SITE FOR RESIDUE U D 9008 source : AC8 58) chain E residue 45 type sequence L description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 59) chain E residue 47 type sequence M description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 60) chain F residue 46 type sequence H description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 61) chain F residue 48 type sequence N description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 62) chain F residue 72 type sequence R description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 63) chain F residue 73 type sequence G description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 64) chain F residue 74 type sequence D description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 65) chain G residue 72 type sequence R description BINDING SITE FOR RESIDUE URI F 9009 source : AC9 66) chain A residue 46 type sequence H description BINDING SITE FOR RESIDUE U A 9010 source : BC1 67) chain A residue 48 type sequence N description BINDING SITE FOR RESIDUE U A 9010 source : BC1 68) chain A residue 72 type sequence R description BINDING SITE FOR RESIDUE U A 9010 source : BC1 69) chain A residue 73 type sequence G description BINDING SITE FOR RESIDUE U A 9010 source : BC1 70) chain A residue 74 type sequence D description BINDING SITE FOR RESIDUE U A 9010 source : BC1 71) chain B residue 72 type sequence R description BINDING SITE FOR RESIDUE U A 9010 source : BC1 72) chain G residue 15 type sequence L description BINDING SITE FOR RESIDUE U A 9010 source : BC1 73) chain B residue 47 type sequence M description BINDING SITE FOR RESIDUE URI C 9011 source : BC2 74) chain C residue 48 type sequence N description BINDING SITE FOR RESIDUE URI C 9011 source : BC2 75) chain C residue 72 type sequence R description BINDING SITE FOR RESIDUE URI C 9011 source : BC2 76) chain C residue 73 type sequence G description BINDING SITE FOR RESIDUE URI C 9011 source : BC2 77) chain C residue 74 type sequence D description BINDING SITE FOR RESIDUE URI C 9011 source : BC2 78) chain D residue 72 type sequence R description BINDING SITE FOR RESIDUE URI C 9011 source : BC2 79) chain F residue 45 type sequence L description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 80) chain F residue 47 type sequence M description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 81) chain G residue 46 type sequence H description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 82) chain G residue 48 type sequence N description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 83) chain G residue 72 type sequence R description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 84) chain G residue 73 type sequence G description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 85) chain G residue 74 type sequence D description BINDING SITE FOR RESIDUE URI G 9012 source : BC3 86) chain H residue 72 type sequence R description BINDING SITE FOR RESIDUE U N 9013 source : BC4 87) chain M residue 46 type sequence H description BINDING SITE FOR RESIDUE U N 9013 source : BC4 88) chain M residue 47 type sequence M description BINDING SITE FOR RESIDUE U N 9013 source : BC4 89) chain N residue 46 type sequence H description BINDING SITE FOR RESIDUE U N 9013 source : BC4 90) chain N residue 48 type sequence N description BINDING SITE FOR RESIDUE U N 9013 source : BC4 91) chain N residue 72 type sequence R description BINDING SITE FOR RESIDUE U N 9013 source : BC4 92) chain N residue 73 type sequence G description BINDING SITE FOR RESIDUE U N 9013 source : BC4 93) chain N residue 74 type sequence D description BINDING SITE FOR RESIDUE U N 9013 source : BC4 94) chain J residue 45 type sequence L description BINDING SITE FOR RESIDUE U K 9014 source : BC5 95) chain J residue 46 type sequence H description BINDING SITE FOR RESIDUE U K 9014 source : BC5 96) chain J residue 47 type sequence M description BINDING SITE FOR RESIDUE U K 9014 source : BC5 97) chain K residue 46 type sequence H description BINDING SITE FOR RESIDUE U K 9014 source : BC5 98) chain K residue 48 type sequence N description BINDING SITE FOR RESIDUE U K 9014 source : BC5 99) chain K residue 72 type sequence R description BINDING SITE FOR RESIDUE U K 9014 source : BC5 100) chain K residue 73 type sequence G description BINDING SITE FOR RESIDUE U K 9014 source : BC5 101) chain K residue 74 type sequence D description BINDING SITE FOR RESIDUE U K 9014 source : BC5 102) chain L residue 72 type sequence R description BINDING SITE FOR RESIDUE U K 9014 source : BC5 103) chain J residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD J 7001 source : BC6 104) chain J residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD J 7001 source : BC6 105) chain J residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD J 7001 source : BC6 106) chain J residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD J 7001 source : BC6 107) chain J residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD J 7001 source : BC6 108) chain K residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD J 7001 source : BC6 109) chain K residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD K 7002 source : BC7 110) chain K residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD K 7002 source : BC7 111) chain K residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD K 7002 source : BC7 112) chain K residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD K 7002 source : BC7 113) chain L residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 114) chain L residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 115) chain L residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 116) chain L residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 117) chain L residue 80 type sequence S description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 118) chain L residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 119) chain M residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 120) chain M residue 69 type sequence V description BINDING SITE FOR RESIDUE MPD L 7003 source : BC8 121) chain D residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD D 7004 source : BC9 122) chain D residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD D 7004 source : BC9 123) chain D residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD D 7004 source : BC9 124) chain D residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD D 7004 source : BC9 125) chain D residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD D 7004 source : BC9 126) chain A residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD A 7005 source : CC1 127) chain A residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD A 7005 source : CC1 128) chain A residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD A 7005 source : CC1 129) chain A residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD A 7005 source : CC1 130) chain C residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD C 7006 source : CC2 131) chain C residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD C 7006 source : CC2 132) chain C residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD C 7006 source : CC2 133) chain C residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD C 7006 source : CC2 134) chain D residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD C 7006 source : CC2 135) chain A residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD G 7007 source : CC3 136) chain G residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD G 7007 source : CC3 137) chain G residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD G 7007 source : CC3 138) chain G residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD G 7007 source : CC3 139) chain H residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD H 7008 source : CC4 140) chain H residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD H 7008 source : CC4 141) chain H residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD H 7008 source : CC4 142) chain H residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD H 7008 source : CC4 143) chain I residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD H 7008 source : CC4 144) chain H residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD N 7009 source : CC5 145) chain N residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD N 7009 source : CC5 146) chain N residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD N 7009 source : CC5 147) chain N residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD N 7009 source : CC5 148) chain M residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD M 7010 source : CC6 149) chain M residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD M 7010 source : CC6 150) chain M residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD M 7010 source : CC6 151) chain M residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD M 7010 source : CC6 152) chain M residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD M 7010 source : CC6 153) chain N residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD M 7010 source : CC6 154) chain B residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD B 7011 source : CC7 155) chain B residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD B 7011 source : CC7 156) chain B residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD B 7011 source : CC7 157) chain B residue 80 type sequence S description BINDING SITE FOR RESIDUE MPD B 7011 source : CC7 158) chain B residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD B 7011 source : CC7 159) chain C residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD B 7011 source : CC7 160) chain E residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD E 7012 source : CC8 161) chain E residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD E 7012 source : CC8 162) chain F residue 50 type sequence V description BINDING SITE FOR RESIDUE MPD E 7012 source : CC8 163) chain F residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD E 7012 source : CC8 164) chain F residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD F 7013 source : CC9 165) chain F residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD F 7013 source : CC9 166) chain F residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD F 7013 source : CC9 167) chain G residue 50 type sequence V description BINDING SITE FOR RESIDUE MPD F 7013 source : CC9 168) chain I residue 17 type sequence A description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1 169) chain I residue 18 type sequence L description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1 170) chain I residue 21 type sequence S description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1 171) chain I residue 79 type sequence I description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1 172) chain I residue 80 type sequence S description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1 173) chain I residue 81 type sequence R description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1 174) chain J residue 68 type sequence T description BINDING SITE FOR RESIDUE MPD I 7014 source : DC1

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