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eF-site ID
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1l9z-H |
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PDB Code
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1l9z |
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Chain
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H |
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click to enlarge
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Title
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Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution |
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Classification
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TRANSCRIPTION/DNA |
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Compound
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nontemplate DNA strand |
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Source
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ORGANISM_SCIENTIFIC: Thermus aquaticus; |
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Sequence
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H: |
SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLS
EATGLDQELIREVVRAKILGTAEVDGKLKSLPKELKRYLH
IAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQE
GNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQA
RTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAM
GPGWDAKRVEETLKIAQEPVSLETPIDFIPDENLPSPVEA
AAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLE
EVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFLE
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Description
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Functional site
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1)
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chain |
H |
| residue |
398-417 |
| type |
DNA_BIND |
| sequence |
LEEVGAYFGVTRERIRQIEN
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| description |
H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
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| source |
Swiss-Prot : SWS_FT_FI1
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2)
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chain |
H |
| residue |
397-423 |
| type |
prosite |
| sequence |
TLEEVGAYFGVTRERIRQIENKALRKL
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| description |
SIGMA70_2 Sigma-70 factors family signature 2. TleEVGayfgVTrerIrQIEnkaLrkL
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| source |
prosite : PS00716
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3)
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chain |
H |
| residue |
202-209 |
| type |
prosite |
| sequence |
LIEANLRL
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| description |
CPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LIEANLRL
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| source |
prosite : PS00867
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