eF-site ID 1l9z-D PDB Code 1l9z Chain D click to enlarge Title Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution Classification TRANSCRIPTION/DNA Compound nontemplate DNA strand Source ORGANISM_SCIENTIFIC: Thermus aquaticus; Sequence D:  KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERD GLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTR SIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATE LEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEDARMG AEAIQELLKELDLEKLERELLEEMKHPSRARRAKARKRLE VVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFAT SDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEA VDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQN LLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFL LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHG KVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFN ADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEP LAKPSRDIILGLYYITQVRKEKKGAGMAFATPEEALAAYE RGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGL LDLQDVVTVRYLGRRLETSPGRILFARIVGEAVGDEKVAQ ELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYY GFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQA YEMGFLTDRERYDQVIQLWTETTEKVTQAVFKNFEENYPF NPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPV RSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRK LVDVAHEIVVREADCGTTNYISVPLFQMDEVTRTLRLRKR SDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKA AEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSI GEAVGVVAAESIGEPGTQLTMRTPRVIELFEARRPKAKAV ISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARLLV KDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQ KVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSRLLEGQ VLEKWDVEALNERLIAVPVAWKPLLMGVTKSALSTKSWLS AASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGT GSDFVRFTQVVDQRTLKAIEEAR Description Functional site 1) chain D residue 69 type sequence E description BINDING SITE FOR RESIDUE ZN D 2003 source : AC1 2) chain D residue 70 type sequence G description BINDING SITE FOR RESIDUE ZN D 2003 source : AC1 3) chain D residue 1201 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 4) chain D residue 1204 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 5) chain D residue 60 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 6) chain D residue 73 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 7) chain D residue 76 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 8) chain D residue 739 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 9) chain D residue 741 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 10) chain D residue 743 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 11) chain D residue 1112 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 12) chain D residue 1194 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1

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