eF-site ID 1l9u-D
PDB Code 1l9u
Chain D

click to enlarge
Title THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME AT 4 A RESOLUTION
Classification TRANSCRIPTION
Compound RNA POLYMERASE, ALPHA SUBUNIT
Source ORGANISM_SCIENTIFIC: Thermus aquaticus;
Sequence D:  KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERD
GLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTR
SIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATE
LEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEDARMG
AEAIQELLKELDLEKLERELLEEMKHPSRARRAKARKRLE
VVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFAT
SDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEA
VDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQN
LLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFL
LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHG
KVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFN
ADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEP
LAKPSRDIILGLYYITQVRKEKKGAGMAFATPEEALAAYE
RGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGL
LDLQDVVTVRYLGRRLETSPGRILFARIVGEAVGDEKVAQ
ELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYY
GFTLSTTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQA
YEMGFLTDRERYDQVIQLWTETTEKVTQAVFKNFEENYPF
NPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPV
RSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRK
LVDVAHEIVVREADCGTTNYISVPLFQMDEVTRTLRLRKR
SDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKA
AEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSI
GEAVGVVAAESIGEPGTQLTMRTPRVIELFEARRPKAKAV
ISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARLLV
KDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQ
KVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSRLLEGQ
VLEKWDVEALNERLIAVPVAWKPLLMGVTKSALSTKSWLS
AASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGT
GSDFVRFTQVVDQRTLKAIEEAR
Description


Functional site

1) chain D
residue 69
type
sequence E
description BINDING SITE FOR RESIDUE ZN D 2003
source : AC1

2) chain D
residue 70
type
sequence G
description BINDING SITE FOR RESIDUE ZN D 2003
source : AC1

3) chain D
residue 1201
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

4) chain D
residue 1204
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

5) chain D
residue 73
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

6) chain D
residue 76
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

7) chain D
residue 739
type DNA_BIND
sequence D
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

8) chain D
residue 741
type DNA_BIND
sequence D
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

9) chain D
residue 743
type DNA_BIND
sequence D
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

10) chain D
residue 1112
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1

11) chain D
residue 1194
type DNA_BIND
sequence C
description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links