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eF-site ID
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1l0m-A |
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PDB Code
|
1l0m |
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Chain
|
A |
|
click to enlarge
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Title
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Solution structure of Bacteriorhodopsin |
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Classification
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PROTON TRANSPORT |
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Compound
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Bacteriorhodopsin |
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Source
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Halobacterium salinarium (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium) (BACR_HALN1) |
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Sequence
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A: |
RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAIT
TLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADW
LFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGA
LTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPE
VASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETL
LFMVLDVSAKVG
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Description
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Functional site
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|
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1)
|
chain |
A |
| residue |
85 |
| type |
SITE |
| sequence |
D
|
| description |
Primary proton acceptor => ECO:0000305|PubMed:10903866, ECO:0000305|PubMed:10949309, ECO:0000305|PubMed:28008064
|
| source |
Swiss-Prot : SWS_FT_FI9
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|
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2)
|
chain |
A |
| residue |
173-191 |
| type |
TRANSMEM |
| sequence |
VLRNVTVVLWSAYPVVWLI
|
| description |
Helical; Name=Helix F => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
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| source |
Swiss-Prot : SWS_FT_FI8
|
|
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3)
|
chain |
A |
| residue |
10-29 |
| type |
TRANSMEM |
| sequence |
WIWLALGTALMGLGTLYFLV
|
| description |
Helical; Name=Helix A => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
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4)
|
chain |
A |
| residue |
216 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-(retinylidene)lysine => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:10467143, ECO:0000269|PubMed:10548112, ECO:0000269|PubMed:10903866, ECO:0000269|PubMed:10949307, ECO:0000269|PubMed:10949309, ECO:0000269|PubMed:11829498, ECO:0000269|PubMed:28008064, ECO:0000269|PubMed:6794028, ECO:0000269|PubMed:9287223, ECO:0000269|PubMed:9632391, ECO:0000269|PubMed:9751724, ECO:0007744|PDB:1C3W, ECO:0007744|PDB:1F50, ECO:0007744|PDB:1IW9, ECO:0007744|PDB:1KG8, ECO:0007744|PDB:1KG9, ECO:0007744|PDB:1M0L, ECO:0007744|PDB:1M0M, ECO:0007744|PDB:1O0A, ECO:0007744|PDB:1P8H, ECO:0007744|PDB:1P8U, ECO:0007744|PDB:1Q5J, ECO:0007744|PDB:1QHJ, ECO:0007744|PDB:1QKP, ECO:0007744|PDB:1QM8, ECO:0007744|PDB:1R2N, ECO:0007744|PDB:1R84, ECO:0007744|PDB:1S8J, ECO:0007744|PDB:1TN0, ECO:0007744|PDB:1TN5, ECO:0007744|PDB:1UCQ, ECO:0007744|PDB:1X0I, ECO:0007744|PDB:1X0K, ECO:0007744|PDB:1X0S, ECO:0007744|PDB:1XJI, ECO:0007744|PDB:2AT9, ECO:0007744|PDB:2BRD, ECO:0007744|PDB:2I1X, ECO:0007744|PDB:2I20, ECO:0007744|PDB:2I21, ECO:0007744|PDB:2NTU, ECO:0007744|PDB:2NTW, ECO:0007744|PDB:2WJK, ECO:0007744|PDB:2WJL, ECO:0007744|PDB:2ZFE, ECO:0007744|PDB:2ZZL, ECO:0007744|PDB:3COD, ECO:0007744|PDB:3HAN, ECO:0007744|PDB:3HAO, ECO:0007744|PDB:3HAP, ECO:0007744|PDB:3HAQ, ECO:0007744|PDB:3HAR, ECO:0007744|PDB:3HAS, ECO:0007744|PDB:3NS0, ECO:0007744|PDB:3NSB, ECO:0007744|PDB:3T45, ECO:0007744|PDB:3UTV, ECO:0007744|PDB:3UTW, ECO:0007744|PDB:3UTX, ECO:0007744|PDB:3VHZ, ECO:0007744|PDB:3VI0, ECO:0007744|PDB:4FPD, ECO:0007744|PDB:4HWL, ECO:0007744|PDB:4MD1, ECO:0007744|PDB:4MD2, ECO:0007744|PDB:4X31, ECO:0007744|PDB:4X32, ECO:0007744|PDB:5A44, ECO:0007744|PDB:5A45, ECO:0007744|PDB:5B34, ECO:0007744|PDB:5B6V, ECO:0007744|PDB:5B6W, ECO:0007744|PDB:5B6X, ECO:0007744|PDB:5B6Y, ECO:0007744|PDB:5B6Z, ECO:0007744|PDB:5BR2, ECO:0007744|PDB:5BR5, ECO:0007744|PDB:5H2H, ECO:0007744|PDB:5H2I, ECO:0007744|PDB:5H2J, ECO:0007744|PDB:5H2K, ECO:0007744|PDB:5H2L, ECO:0007744|PDB:5H2M, ECO:0007744|PDB:5H2N, ECO:0007744|PDB:5H2O, ECO:0007744|PDB:5H2P, ECO:0007744|PDB:5J7A
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
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5)
|
chain |
A |
| residue |
30-43 |
| type |
TOPO_DOM |
| sequence |
KGMGVSDPDAKKFY
|
| description |
Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
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6)
|
chain |
A |
| residue |
97-107 |
| type |
TOPO_DOM |
| sequence |
LALLVDADQGT
|
| description |
Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
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7)
|
chain |
A |
| residue |
155-172 |
| type |
TOPO_DOM |
| sequence |
GFTSKAESMRPEVASTFK
|
| description |
Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
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8)
|
chain |
A |
| residue |
44-62 |
| type |
TRANSMEM |
| sequence |
AITTLVPAIAFTMYLSMLL
|
| description |
Helical; Name=Helix B => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
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9)
|
chain |
A |
| residue |
63-79 |
| type |
TOPO_DOM |
| sequence |
GYGLTMVPFGGEQNPIY
|
| description |
Extracellular => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
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10)
|
chain |
A |
| residue |
128-134 |
| type |
TOPO_DOM |
| sequence |
TKVYSYR
|
| description |
Extracellular => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
11)
|
chain |
A |
| residue |
192-203 |
| type |
TOPO_DOM |
| sequence |
GSEGAGIVPLNI
|
| description |
Extracellular => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
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12)
|
chain |
A |
| residue |
80-96 |
| type |
TRANSMEM |
| sequence |
WARYADWLFTTPLLLLD
|
| description |
Helical; Name=Helix C => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI5
|
|
|
13)
|
chain |
A |
| residue |
108-127 |
| type |
TRANSMEM |
| sequence |
ILALVGADGIMIGTGLVGAL
|
| description |
Helical; Name=Helix D => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI6
|
|
|
14)
|
chain |
A |
| residue |
135-154 |
| type |
TRANSMEM |
| sequence |
FVWWAISTAAMLYILYVLFF
|
| description |
Helical; Name=Helix E => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
| source |
Swiss-Prot : SWS_FT_FI7
|
|
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15)
|
chain |
A |
| residue |
82-94 |
| type |
prosite |
| sequence |
RYADWLFTTPLLL
|
| description |
BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYaDWlFTTPLLL
|
| source |
prosite : PS00950
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