eF-site ID 1kx5-D
PDB Code 1kx5
Chain D

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Title X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution
Classification STRUCTURAL PROTEIN/DNA
Compound DNA (5'(ATCAATATCCACCTGCAGATACTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGGAATCCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGTATCTGCAGGTGGATATTGAT)3')
Source Bos taurus (Bovine) (1KX5)
Sequence D:  AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYK
VLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHY
NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
AK
Description


Functional site

1) chain D
residue 45
type
sequence V
description BINDING SITE FOR RESIDUE MN E 3132
source : AC2

2) chain D
residue 87
type
sequence T
description BINDING SITE FOR RESIDUE CL D 3146
source : BC7

3) chain D
residue 88
type
sequence S
description BINDING SITE FOR RESIDUE CL D 3146
source : BC7

4) chain D
residue 89-111
type prosite
sequence REIQTAVRLLLPGELAKHAVSEG
description HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
source prosite : PS00357

5) chain D
residue 3
type MOD_RES
sequence S
description N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4
source Swiss-Prot : SWS_FT_FI1

6) chain D
residue 10
type MOD_RES
sequence G
description N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4
source Swiss-Prot : SWS_FT_FI1

7) chain D
residue 13
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4
source Swiss-Prot : SWS_FT_FI1

8) chain D
residue 18
type MOD_RES
sequence T
description N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4
source Swiss-Prot : SWS_FT_FI1

9) chain D
residue 12
type MOD_RES
sequence K
description Phosphoserine => ECO:0000269|PubMed:12757711
source Swiss-Prot : SWS_FT_FI2

10) chain D
residue 110
type CARBOHYD
sequence E
description O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807
source Swiss-Prot : SWS_FT_FI3

11) chain D
residue 118
type CROSSLNK
sequence Y
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0C1H4
source Swiss-Prot : SWS_FT_FI4


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