eF-site ID 1kx3-D
PDB Code 1kx3
Chain D

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Title X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution
Classification STRUCTURAL PROTEIN/DNA
Compound DNA (5'(ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT)3')
Source Xenopus laevis (African clawed frog) (1KX3)
Sequence D:  TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFE
RIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAV
SEGTKAVTKYTSAK
Description


Functional site

1) chain D
residue 45
type
sequence V
description BINDING SITE FOR RESIDUE MN E 946
source : AC3

2) chain D
residue 89-111
type prosite
sequence REIQTAVRLLLPGELAKHAVSEG
description HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
source prosite : PS00357

3) chain D
residue 110
type CARBOHYD
sequence E
description O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807
source Swiss-Prot : SWS_FT_FI3

4) chain D
residue 118
type CROSSLNK
sequence Y
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0C1H4
source Swiss-Prot : SWS_FT_FI4


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