eF-site ID 1kc8-C
PDB Code 1kc8
Chain C

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Title Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Classification RIBOSOME
Compound 23S RRNA
Source ORGANISM_SCIENTIFIC: Haloarcula marismortui;
Sequence C:  GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAG
TVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDEL
QVGVDAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFAR
ASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVG
GGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHP
FGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG
Description


Functional site

1) chain C
residue 207
type
sequence Q
description BINDING SITE FOR RESIDUE MG A 8057
source : GC5

2) chain C
residue 26
type
sequence D
description BINDING SITE FOR RESIDUE MG A 8066
source : HC4

3) chain C
residue 188
type
sequence N
description BINDING SITE FOR RESIDUE MG A 8067
source : HC5

4) chain C
residue 201
type
sequence F
description BINDING SITE FOR RESIDUE NA C 8345
source : WC2

5) chain C
residue 202
type
sequence G
description BINDING SITE FOR RESIDUE NA C 8345
source : WC2

6) chain C
residue 203
type
sequence G
description BINDING SITE FOR RESIDUE NA C 8345
source : WC2

7) chain C
residue 208
type
sequence H
description BINDING SITE FOR RESIDUE NA C 8345
source : WC2

8) chain C
residue 175
type
sequence K
description BINDING SITE FOR RESIDUE CL C 8509
source : WC3

9) chain C
residue 178
type
sequence K
description BINDING SITE FOR RESIDUE CL C 8509
source : WC3

10) chain C
residue 171
type
sequence K
description BINDING SITE FOR RESIDUE MG 1 8105
source : ZC5

11) chain C
residue 174
type
sequence N
description BINDING SITE FOR RESIDUE MG 1 8105
source : ZC5

12) chain C
residue 187-198
type prosite
sequence PNVRGVAMNAVD
description RIBOSOMAL_L2 Ribosomal protein L2 signature. PnvRGVAmNAvD
source prosite : PS00467


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