eF-site ID 1jey-ABCD
PDB Code 1jey
Chain A, B, C, D

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Title Crystal Structure of the Ku heterodimer bound to DNA
Classification DNA BINDING PROTEIN/DNA
Compound DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*GP*TP*TP*TP*AP*TP*TP*GP*GP*GP*CP*GP*CP*G)-3')
Source Homo sapiens (Human) (1JEY)
Sequence A:  GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYIS
KIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA
KRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANL
FSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL
RDTGIFLDLMHLKKPGGFDISLFYRDIISVHFEESSKLED
LLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKAL
KPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQI
YGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHY
LRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYT
PRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFAD
DKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENP
VLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSL
VDEFKELVYPPDY
B:  NKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQ
VFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLML
PDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGK
KFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFL
PFSLGGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISL
EGEDGLDEIYSFSESLRKLCVFKKIERHSIHWPCRLTIGS
NLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVY
CLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKS
EGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAV
ALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHN
YECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVD
ALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLL
HRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKT
LFPLIEAKKK
C:  GTTTTTAGTTTATTGGGC
D:  GCCCAGCTTTCCCAGCTAATAAACTAAAAAC
Description


Functional site

1) chain B
residue 145
type MOD_RES
sequence S
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI1

2) chain B
residue 266
type MOD_RES
sequence S
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI1

3) chain B
residue 333
type MOD_RES
sequence Y
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI1

4) chain A
residue 288
type CROSSLNK
sequence L
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI10

5) chain A
residue 318
type CROSSLNK
sequence R
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI10

6) chain B
residue 256
type MOD_RES
sequence N
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

7) chain B
residue 259
type MOD_RES
sequence I
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

8) chain B
residue 319
type MOD_RES
sequence D
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI2

9) chain B
residue 536
type MOD_RES
sequence L
description Phosphothreonine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI3

10) chain B
residue 196
type CROSSLNK
sequence G
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI4

11) chain A
residue 332
type CROSSLNK
sequence E
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI4

12) chain B
residue 533
type CROSSLNK
sequence I
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI4

13) chain B
residue 535
type CROSSLNK
sequence T
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI4

14) chain A
residue 52
type MOD_RES
sequence Q
description Phosphoserine; by PRKDC => ECO:0000269|PubMed:9362500
source Swiss-Prot : SWS_FT_FI5

15) chain A
residue 456
type MOD_RES
sequence P
description Phosphothreonine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI6

16) chain A
residue 478
type MOD_RES
sequence F
description Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI7

17) chain A
residue 521
type MOD_RES
sequence L
description Phosphoserine => ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI8


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