eF-site ID 1i94-BCDEFGHIJKLMNOPQRSTU PDB Code 1i94 Chain B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U click to enlarge Title CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3 Classification RIBOSOME Compound 16S RRNA Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence B:  PVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHI IDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIV RMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEAL FASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDA IFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYII PGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE AEATETPEG C:  GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRG LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG ERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVA EQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAE QARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY IFLGEV D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ LVIEFYSR E:  PETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRV GLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIE VEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTK ELGSRNPINIAYATMEALRQLRTKADVERLRKGEAH F:  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKV EELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR IRDNVRRVMVVKSQEPFLANA G:  ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAAR IFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVG GANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIA HELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW H:  MLTDPIADMLTRIRNATRVYKESTEVPASRFKEEILKILA REGFIKGYERVEVDGKPYLRIHLKYGPRRQGPDPRPEQVI KHIRRISRPGRRVYVGVKEIPRVRRGLGIAILSTPKGVLT DREARKLGVGGELICEVW I:  EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLV RAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARR APQYSKR J:  KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT RVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI EQLMTLDLPTGVEIEIKT K:  KKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGG VIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRG TGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR KAS L:  PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVT PKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK PKEAAKTAAKK M:  ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINP ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL MDIGCYRGLRHRR N:  ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCR ICLRELAHKGQLPGVRKASW O:  PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE HLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRAL IEKLGIRG P:  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF RQEAREGA Q:  PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKK YLAHDPEERYKVGDVVEIIEARPISKRKRFRVLRLVEEGR LDLVEKYLVRRQNYASLSKRGGKA R:  KPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSE TGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLV RK S:  PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIV PEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYR T:  RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEG KAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK VRQLLEAAGAPLIGGGLSA U:  GKGDRRTRRGKIWRGTYGKYRPRK Description Functional site 1) chain E residue 120 type sequence T description BINDING SITE FOR RESIDUE MG E 1 source : AC1 2) chain E residue 121 type sequence K description BINDING SITE FOR RESIDUE MG E 1 source : AC1 3) chain E residue 122 type sequence E description BINDING SITE FOR RESIDUE MG E 1 source : AC1 4) chain L residue 124 type sequence K description BINDING SITE FOR RESIDUE MG L 136 source : AC3 5) chain L residue 125 type sequence P description BINDING SITE FOR RESIDUE MG L 136 source : AC3 6) chain T residue 76 type sequence A description BINDING SITE FOR RESIDUE MG T 107 source : BC1 7) chain T residue 77 type sequence A description BINDING SITE FOR RESIDUE MG T 107 source : BC1 8) chain T residue 78 type sequence A description BINDING SITE FOR RESIDUE MG T 107 source : BC1 9) chain T residue 79 type sequence R description BINDING SITE FOR RESIDUE MG T 107 source : BC1 10) chain T residue 80 type sequence R description BINDING SITE FOR RESIDUE MG T 107 source : BC1 11) chain T residue 81 type sequence K description BINDING SITE FOR RESIDUE MG T 107 source : BC1 12) chain Q residue 25 type sequence R description BINDING SITE FOR RESIDUE MG Q 106 source : BC4 13) chain Q residue 37 type sequence K description BINDING SITE FOR RESIDUE MG Q 106 source : BC4 14) chain Q residue 38 type sequence R description BINDING SITE FOR RESIDUE MG Q 106 source : BC4 15) chain Q residue 66 type sequence S description BINDING SITE FOR RESIDUE MG Q 107 source : BC5 16) chain Q residue 67 type sequence K description BINDING SITE FOR RESIDUE MG Q 107 source : BC5 17) chain Q residue 68 type sequence R description BINDING SITE FOR RESIDUE MG Q 107 source : BC5 18) chain Q residue 69 type sequence K description BINDING SITE FOR RESIDUE MG Q 107 source : BC5 19) chain P residue 27 type sequence K description BINDING SITE FOR RESIDUE MG P 89 source : BC7 20) chain P residue 28 type sequence R description BINDING SITE FOR RESIDUE MG P 89 source : BC7 21) chain P residue 29 type sequence D description BINDING SITE FOR RESIDUE MG P 89 source : BC7 22) chain T residue 15 type sequence R description BINDING SITE FOR RESIDUE MG T 108 source : BC8 23) chain T residue 16 type sequence H description BINDING SITE FOR RESIDUE MG T 108 source : BC8 24) chain T residue 17 type sequence R description BINDING SITE FOR RESIDUE MG T 108 source : BC8 25) chain T residue 18 type sequence Q description BINDING SITE FOR RESIDUE MG T 108 source : BC8 26) chain T residue 19 type sequence S description BINDING SITE FOR RESIDUE MG T 108 source : BC8 27) chain T residue 20 type sequence L description BINDING SITE FOR RESIDUE MG T 108 source : BC8 28) chain T residue 9 type sequence N description BINDING SITE FOR RESIDUE MG T 109 source : BC9 29) chain T residue 10 type sequence L description BINDING SITE FOR RESIDUE MG T 109 source : BC9 30) chain T residue 11 type sequence S description BINDING SITE FOR RESIDUE MG T 109 source : BC9 31) chain T residue 12 type sequence A description BINDING SITE FOR RESIDUE MG T 109 source : BC9 32) chain L residue 32 type sequence F description BINDING SITE FOR RESIDUE MG L 137 source : CC2 33) chain L residue 33 type sequence R description BINDING SITE FOR RESIDUE MG L 137 source : CC2 34) chain D residue 2 type sequence G description BINDING SITE FOR RESIDUE MG D 210 source : CC4 35) chain D residue 3 type sequence R description BINDING SITE FOR RESIDUE MG D 210 source : CC4 36) chain D residue 113 type sequence S description BINDING SITE FOR RESIDUE MG D 211 source : CC5 37) chain D residue 114 type sequence R description BINDING SITE FOR RESIDUE MG D 211 source : CC5 38) chain D residue 115 type sequence R description BINDING SITE FOR RESIDUE MG D 211 source : CC5 39) chain D residue 116 type sequence Q description BINDING SITE FOR RESIDUE MG D 211 source : CC5 40) chain L residue 131 type sequence T description BINDING SITE FOR RESIDUE MG L 138 source : CC6 41) chain L residue 132 type sequence A description BINDING SITE FOR RESIDUE MG L 138 source : CC6 42) chain L residue 133 type sequence A description BINDING SITE FOR RESIDUE MG L 138 source : CC6 43) chain K residue 42 type sequence W description BINDING SITE FOR RESIDUE MG K 130 source : DC7 44) chain G residue 82 type sequence G description BINDING SITE FOR RESIDUE MG G 157 source : DC8 45) chain J residue 62 type sequence H description BINDING SITE FOR RESIDUE MG J 106 source : GC3 46) chain N residue 24 type sequence C description BINDING SITE FOR RESIDUE ZN N 76 source : GC5 47) chain N residue 27 type sequence C description BINDING SITE FOR RESIDUE ZN N 76 source : GC5 48) chain N residue 40 type sequence C description BINDING SITE FOR RESIDUE ZN N 76 source : GC5 49) chain N residue 43 type sequence C description BINDING SITE FOR RESIDUE ZN N 76 source : GC5 50) chain D residue 9 type sequence C description BINDING SITE FOR RESIDUE ZN D 212 source : GC6 51) chain D residue 12 type sequence C description BINDING SITE FOR RESIDUE ZN D 212 source : GC6 52) chain D residue 31 type sequence C description BINDING SITE FOR RESIDUE ZN D 212 source : GC6 53) chain B residue 36 type sequence R description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 54) chain B residue 37 type sequence N description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 55) chain B residue 38 type sequence G description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 56) chain B residue 76 type sequence Q description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 57) chain B residue 207 type sequence A description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 58) chain B residue 208 type sequence I description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 59) chain B residue 209 type sequence R description BINDING SITE FOR RESIDUE WO2 B 1001 source : GC7 60) chain C residue 71 type sequence A description BINDING SITE FOR RESIDUE WO2 B 1002 source : GC8 61) chain C residue 72 type sequence K description BINDING SITE FOR RESIDUE WO2 B 1002 source : GC8 62) chain C residue 109 type sequence P description BINDING SITE FOR RESIDUE WO2 B 1002 source : GC8 63) chain C residue 147 type sequence K description BINDING SITE FOR RESIDUE WO2 C 1003 source : GC9 64) chain C residue 205 type sequence G description BINDING SITE FOR RESIDUE WO2 C 1003 source : GC9 65) chain C residue 206 type sequence E description BINDING SITE FOR RESIDUE WO2 C 1003 source : GC9 66) chain B residue 74 type sequence K description BINDING SITE FOR RESIDUE WO2 B 1004 source : HC1 67) chain B residue 75 type sequence K description BINDING SITE FOR RESIDUE WO2 B 1004 source : HC1 68) chain B residue 76 type sequence Q description BINDING SITE FOR RESIDUE WO2 B 1004 source : HC1 69) chain D residue 28 type sequence S description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 70) chain D residue 29 type sequence P description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 71) chain E residue 152 type sequence R description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 72) chain E residue 153 type sequence K description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 73) chain E residue 154 type sequence G description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 74) chain E residue 155 type sequence E description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 75) chain E residue 156 type sequence A description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 76) chain H residue 67 type sequence P description BINDING SITE FOR RESIDUE WO2 E 1005 source : HC2 77) chain G residue 147 type sequence A description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 78) chain G residue 148 type sequence N description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 79) chain G residue 149 type sequence R description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 80) chain G residue 150 type sequence A description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 81) chain G residue 151 type sequence Y description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 82) chain G residue 152 type sequence A description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 83) chain G residue 155 type sequence R description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 84) chain G residue 156 type sequence W description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 85) chain K residue 58 type sequence P description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 86) chain K residue 59 type sequence Y description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 87) chain K residue 93 type sequence Q description BINDING SITE FOR RESIDUE WO2 G 1006 source : HC3 88) chain G residue 113 type sequence E description BINDING SITE FOR RESIDUE WO2 G 1007 source : HC4 89) chain G residue 114 type sequence R description BINDING SITE FOR RESIDUE WO2 G 1007 source : HC4 90) chain G residue 118 type sequence V description BINDING SITE FOR RESIDUE WO2 G 1007 source : HC4 91) chain R residue 45 type sequence S description BINDING SITE FOR RESIDUE WO2 R 1008 source : HC5 92) chain R residue 46 type sequence E description BINDING SITE FOR RESIDUE WO2 R 1008 source : HC5 93) chain R residue 49 type sequence K description BINDING SITE FOR RESIDUE WO2 R 1008 source : HC5 94) chain R residue 50 type sequence I description BINDING SITE FOR RESIDUE WO2 R 1008 source : HC5 95) chain R residue 51 type sequence L description BINDING SITE FOR RESIDUE WO2 R 1008 source : HC5 96) chain J residue 14 type sequence K description BINDING SITE FOR RESIDUE WO2 J 1009 source : HC6 97) chain J residue 18 type sequence A description BINDING SITE FOR RESIDUE WO2 J 1009 source : HC6 98) chain J residue 90 type sequence L description BINDING SITE FOR RESIDUE WO2 J 1009 source : HC6 99) chain J residue 91 type sequence P description BINDING SITE FOR RESIDUE WO2 J 1009 source : HC6 100) chain D residue 166 type sequence K description BINDING SITE FOR RESIDUE WO2 H 1010 source : HC7 101) chain D residue 167 type sequence G description BINDING SITE FOR RESIDUE WO2 H 1010 source : HC7 102) chain H residue 105 type sequence R description BINDING SITE FOR RESIDUE WO2 H 1010 source : HC7 103) chain H residue 106 type sequence G description BINDING SITE FOR RESIDUE WO2 H 1010 source : HC7 104) chain H residue 122 type sequence R description BINDING SITE FOR RESIDUE WO2 H 1010 source : HC7 105) chain C residue 162 type sequence Q description BINDING SITE FOR RESIDUE WO2 A 1576 source : HC8 106) chain C residue 129 type sequence A description BINDING SITE FOR RESIDUE WO2 D 1012 source : HC9 107) chain C residue 131 type sequence R description BINDING SITE FOR RESIDUE WO2 D 1012 source : HC9 108) chain D residue 49 type sequence R description BINDING SITE FOR RESIDUE WO2 D 1012 source : HC9 109) chain D residue 50 type sequence R description BINDING SITE FOR RESIDUE WO2 D 1012 source : HC9 110) chain E residue 51 type sequence V description BINDING SITE FOR RESIDUE WO2 D 1012 source : HC9 111) chain K residue 9 type sequence K description BINDING SITE FOR RESIDUE WO2 T 1013 source : IC1 112) chain T residue 54 type sequence K description BINDING SITE FOR RESIDUE WO2 T 1013 source : IC1 113) chain K residue 7 type sequence K description BINDING SITE FOR RESIDUE WO2 K 1014 source : IC2 114) chain K residue 8 type sequence K description BINDING SITE FOR RESIDUE WO2 K 1014 source : IC2 115) chain T residue 48 type sequence K description BINDING SITE FOR RESIDUE WO2 K 1014 source : IC2 116) chain T residue 49 type sequence A description BINDING SITE FOR RESIDUE WO2 K 1014 source : IC2 117) chain T residue 50 type sequence E description BINDING SITE FOR RESIDUE WO2 K 1014 source : IC2 118) chain T residue 51 type sequence E description BINDING SITE FOR RESIDUE WO2 K 1014 source : IC2 119) chain N residue 25 type BINDING sequence V description BINDING => ECO:0000255|HAMAP-Rule:MF_01364 source Swiss-Prot : SWS_FT_FI1 120) chain N residue 28 type BINDING sequence G description BINDING => ECO:0000255|HAMAP-Rule:MF_01364 source Swiss-Prot : SWS_FT_FI1 121) chain N residue 41 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01364 source Swiss-Prot : SWS_FT_FI1 122) chain N residue 44 type BINDING sequence L description BINDING => ECO:0000255|HAMAP-Rule:MF_01364 source Swiss-Prot : SWS_FT_FI1 123) chain N residue 24 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI2 124) chain N residue 27 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI2 125) chain N residue 40 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI2 126) chain N residue 43 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI2 127) chain D residue 97-121 type prosite sequence LESRLDNVVYRLGFAVSRRQARQLV description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV source prosite : PS00632 128) chain J residue 27-42 type prosite sequence ARRSGAQVSGPIPLPT description RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT source prosite : PS00361 129) chain G residue 20-46 type prosite sequence DVLVTAFINKIMRDGKKNLAARIFYDA description RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA source prosite : PS00052 130) chain O residue 39-69 type prosite sequence LSEHLKVHKKDHHSHRGLLMMVGQRRRLLRY description RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY source prosite : PS00362 131) chain R residue 32-55 type prosite sequence RDYRNVEVLKRFLSETGKILPRRR description RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR source prosite : PS00057 132) chain R residue 66-81 type prosite sequence LAKTIKRARILGLLPF description ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF source prosite : PS00063 133) chain C residue 163-197 type prosite sequence ARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLG description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG source prosite : PS00548 134) chain S residue 53-77 type prosite sequence NGKQHVPVYITENMVGHKLGEFAPT description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT source prosite : PS00323 135) chain K residue 95-117 type prosite sequence IRALQASGLQVKSIVDDTPVPHN description RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN source prosite : PS00054 136) chain I residue 67-85 type prosite sequence GGGKSGQIDAIKLGIARAL description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL source prosite : PS00360 137) chain Q residue 54-66 type prosite sequence GDVVEIIEARPIS description RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEaRPIS source prosite : PS00056 138) chain B residue 7-18 type prosite sequence VKELLEAGVHFG description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG source prosite : PS00962 139) chain H residue 108-125 type prosite sequence GIAILSTPKGVLTDREAR description RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTPkGVLtdreAR source prosite : PS00053 140) chain F residue 44-53 type prosite sequence GLRRLAYPIA description RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA source prosite : PS01048 141) chain E residue 23-55 type prosite sequence GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAV description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV source prosite : PS00585 142) chain L residue 46-53 type prosite sequence KKPNSALR description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR source prosite : PS00055 143) chain N residue 23-45 type prosite sequence RCVRCGRARSVYRFFGLCRICLR description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR source prosite : PS00527

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