eF-site ID 1i6v-C PDB Code 1i6v Chain C click to enlarge Title THERMUS AQUATICUS CORE RNA POLYMERASE-RIFAMPICIN COMPLEX Classification TRANSCRIPTION Compound DNA-DIRECTED RNA POLYMERASE Source ORGANISM_SCIENTIFIC: Thermus aquaticus; Sequence C:  KIKRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKREN VGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQD ECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPLM TEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIAS IIPLPKRGPWIDLEVEASGVVTMKVNKRKFPLVLLLRVLG YDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLFTL LRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKL GVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGHE VDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVM GSPDTLTPAKLVNSRPLEAALREFFSRSQLSQFKDETNPL SSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPV ETPEGANIGLITSLAAYARVDALGFIRTPYRRVKNGVVTE EVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGEP VIVAPEEVEFMDVSPKQVFSLNTNLIPFLEHDDANRALMG SNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDG EVVKVDGTRIAVRYEDGRLVHPLRRYARSNQGTAFDQRPR VRVGQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFDGY NFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERI TRDIPHLSEAALRDLDEEGIVRIGAEVKPGDILVGRTSFK GEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVG RLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANR HGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNL GQILETHLGLAGYFLGQRYISPVFDGATEPEIKELLAEAF NLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQ LKELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVE DKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEA YGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEPSVP ESFRVLVKELQALALDVQTLDEKDNPVDVFEGL Description Functional site 1) chain C residue 134 type sequence R description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 2) chain C residue 389 type sequence S description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 3) chain C residue 390 type sequence Q description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 4) chain C residue 391 type sequence L description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 5) chain C residue 392 type sequence S description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 6) chain C residue 393 type sequence Q description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 7) chain C residue 394 type sequence F description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 8) chain C residue 396 type sequence D description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 9) chain C residue 409 type sequence R description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 10) chain C residue 411 type sequence S description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 11) chain C residue 445 type sequence E description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 12) chain C residue 452 type sequence I description BINDING SITE FOR RESIDUE RFP C 1640 source : AC3 13) chain C residue 836-848 type prosite sequence GDKLANRHGNKGV description RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV source prosite : PS01166

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