eF-site ID 1i5l-ABCDEFGHIJKLMNUY PDB Code 1i5l Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N, U, Y click to enlarge Title CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA Classification RNA BINDING PROTEIN/RNA Compound 5'-R(*UP*UP*U)-3' Source Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (1I5L) Sequence A:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA B:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPG C:  MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNL VLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP D:  PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLV LLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP E:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA F:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP G:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP H:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP I:  MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNL VLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA J:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP K:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP L:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP M:  PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLV LLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA N:  PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVL LDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA U:  UUU Y:  UUU Description Functional site 1) chain A residue 36 type sequence I description BINDING SITE FOR RESIDUE URI B 101 source : AC1 2) chain B residue 37 type sequence H description BINDING SITE FOR RESIDUE URI B 101 source : AC1 3) chain B residue 39 type sequence N description BINDING SITE FOR RESIDUE URI B 101 source : AC1 4) chain B residue 63 type sequence R description BINDING SITE FOR RESIDUE URI B 101 source : AC1 5) chain B residue 64 type sequence G description BINDING SITE FOR RESIDUE URI B 101 source : AC1 6) chain B residue 65 type sequence D description BINDING SITE FOR RESIDUE URI B 101 source : AC1 7) chain A residue 37 type sequence H description BINDING SITE FOR RESIDUE URI A 201 source : AC2 8) chain A residue 39 type sequence N description BINDING SITE FOR RESIDUE URI A 201 source : AC2 9) chain A residue 63 type sequence R description BINDING SITE FOR RESIDUE URI A 201 source : AC2 10) chain A residue 64 type sequence G description BINDING SITE FOR RESIDUE URI A 201 source : AC2 11) chain A residue 65 type sequence D description BINDING SITE FOR RESIDUE URI A 201 source : AC2 12) chain G residue 36 type sequence I description BINDING SITE FOR RESIDUE URI A 201 source : AC2 13) chain G residue 37 type sequence H description BINDING SITE FOR RESIDUE URI A 201 source : AC2 14) chain G residue 38 type sequence M description BINDING SITE FOR RESIDUE URI A 201 source : AC2 15) chain U residue 3 type sequence U description BINDING SITE FOR RESIDUE URI A 201 source : AC2 16) chain B residue 36 type sequence I description BINDING SITE FOR RESIDUE URI C 301 source : AC3 17) chain B residue 37 type sequence H description BINDING SITE FOR RESIDUE URI C 301 source : AC3 18) chain B residue 38 type sequence M description BINDING SITE FOR RESIDUE URI C 301 source : AC3 19) chain B residue 65 type sequence D description BINDING SITE FOR RESIDUE URI C 301 source : AC3 20) chain C residue 37 type sequence H description BINDING SITE FOR RESIDUE URI C 301 source : AC3 21) chain C residue 39 type sequence N description BINDING SITE FOR RESIDUE URI C 301 source : AC3 22) chain C residue 63 type sequence R description BINDING SITE FOR RESIDUE URI C 301 source : AC3 23) chain C residue 64 type sequence G description BINDING SITE FOR RESIDUE URI C 301 source : AC3 24) chain C residue 65 type sequence D description BINDING SITE FOR RESIDUE URI C 301 source : AC3 25) chain H residue 37 type sequence H description BINDING SITE FOR RESIDUE URI H 401 source : AC4 26) chain H residue 39 type sequence N description BINDING SITE FOR RESIDUE URI H 401 source : AC4 27) chain H residue 63 type sequence R description BINDING SITE FOR RESIDUE URI H 401 source : AC4 28) chain H residue 64 type sequence G description BINDING SITE FOR RESIDUE URI H 401 source : AC4 29) chain H residue 65 type sequence D description BINDING SITE FOR RESIDUE URI H 401 source : AC4 30) chain I residue 63 type sequence R description BINDING SITE FOR RESIDUE URI H 401 source : AC4 31) chain N residue 36 type sequence I description BINDING SITE FOR RESIDUE URI H 401 source : AC4 32) chain N residue 38 type sequence M description BINDING SITE FOR RESIDUE URI H 401 source : AC4

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