eF-site ID
|
1hnx-BCDEFGHIJKLMNOPQRSTV |
PDB Code
|
1hnx |
Chain
|
B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, V |
|
click to enlarge
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Title
|
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN |
Classification
|
RIBOSOME |
Compound
|
16S RIBOSOMAL RNA |
Source
|
ORGANISM_SCIENTIFIC: Thermus thermophilus; |
|
Sequence
|
B: |
VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQK
TMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE
RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE
IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD
PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDD
AIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ
|
C: |
GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRG
LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG
ERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVA
EQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAE
QARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY
IFLGEV
|
D: |
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG
QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE
ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV
RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN
LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR
|
E: |
DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLG
FGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEF
GASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELG
SRNPINIAYATMEALRQLRTKADVERLRKG
|
F: |
MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKV
EELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR
IRDNVRRVMVVKSQEPFLANA
|
G: |
ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAAR
IFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVG
GANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIA
HELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
|
H: |
MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILA
REGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVI
HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT
DREARKLGVGGELICEVW
|
I: |
EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLV
RAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI
ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARR
APQYSKR
|
J: |
KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT
RVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI
EQLMTLDLPTGVEIEIKT
|
K: |
KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGY
KGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG
REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS
|
L: |
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVT
PKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL
IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK
PKEA
|
M: |
ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINP
ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL
MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK
KAPRK
|
N: |
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCR
ICLRELAHKGQLPGVRKASW
|
O: |
PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE
HLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRAL
IEKLGIRG
|
P: |
MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD
PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF
RQEAREGA
|
Q: |
PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKK
YLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR
MDLVEKYLIRRQNYQSLSKRGGKA
|
R: |
PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRR
TGLSGKEQRILAKTIKRARILGLLPFTEKLVRK
|
S: |
PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIV
PEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYR
|
T: |
RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEG
KAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK
VRQLLEAAGAPLIGGGLSA
|
V: |
GKGDRRTRRGKIWRGTYGKYRPRK
|
|
Description
|
|
|
|
1)
|
chain |
N |
residue |
20 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG A 1576
|
source |
: DC1
|
|
2)
|
chain |
V |
residue |
5 |
type |
|
sequence |
D
|
description |
BINDING SITE FOR RESIDUE MG A 1605
|
source |
: FC9
|
|
3)
|
chain |
D |
residue |
82 |
type |
|
sequence |
A
|
description |
BINDING SITE FOR RESIDUE MG D 215
|
source |
: GC4
|
|
4)
|
chain |
D |
residue |
83 |
type |
|
sequence |
S
|
description |
BINDING SITE FOR RESIDUE MG D 215
|
source |
: GC4
|
|
5)
|
chain |
D |
residue |
85 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE MG D 215
|
source |
: GC4
|
|
6)
|
chain |
D |
residue |
87 |
type |
|
sequence |
G
|
description |
BINDING SITE FOR RESIDUE MG D 215
|
source |
: GC4
|
|
7)
|
chain |
D |
residue |
89 |
type |
|
sequence |
T
|
description |
BINDING SITE FOR RESIDUE MG D 215
|
source |
: GC4
|
|
8)
|
chain |
L |
residue |
116 |
type |
|
sequence |
S
|
description |
BINDING SITE FOR RESIDUE MG A 1607
|
source |
: GC5
|
|
9)
|
chain |
L |
residue |
49 |
type |
|
sequence |
N
|
description |
BINDING SITE FOR RESIDUE MG A 1611
|
source |
: GC9
|
|
10)
|
chain |
Q |
residue |
39 |
type |
|
sequence |
S
|
description |
BINDING SITE FOR RESIDUE MG A 1612
|
source |
: HC1
|
|
11)
|
chain |
Q |
residue |
31 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE MG A 1618
|
source |
: HC6
|
|
12)
|
chain |
N |
residue |
24 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN N 190
|
source |
: JC2
|
|
13)
|
chain |
N |
residue |
27 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN N 190
|
source |
: JC2
|
|
14)
|
chain |
N |
residue |
40 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN N 190
|
source |
: JC2
|
|
15)
|
chain |
N |
residue |
43 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN N 190
|
source |
: JC2
|
|
16)
|
chain |
D |
residue |
9 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN D 300
|
source |
: JC3
|
|
17)
|
chain |
D |
residue |
12 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN D 300
|
source |
: JC3
|
|
18)
|
chain |
D |
residue |
19 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE ZN D 300
|
source |
: JC3
|
|
19)
|
chain |
D |
residue |
26 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN D 300
|
source |
: JC3
|
|
20)
|
chain |
D |
residue |
31 |
type |
|
sequence |
C
|
description |
BINDING SITE FOR RESIDUE ZN D 300
|
source |
: JC3
|
|
21)
|
chain |
G |
residue |
20-46 |
type |
prosite |
sequence |
DVLVTAFINKIMRDGKKNLAARIFYDA
|
description |
RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA
|
source |
prosite : PS00052
|
|
22)
|
chain |
H |
residue |
108-125 |
type |
prosite |
sequence |
GIAILSTSKGVLTDREAR
|
description |
RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR
|
source |
prosite : PS00053
|
|
23)
|
chain |
K |
residue |
95-117 |
type |
prosite |
sequence |
IRALQASGLQVKSIVDDTPVPHN
|
description |
RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN
|
source |
prosite : PS00054
|
|
24)
|
chain |
L |
residue |
46-53 |
type |
prosite |
sequence |
KKPNSALR
|
description |
RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
|
source |
prosite : PS00055
|
|
25)
|
chain |
Q |
residue |
54-66 |
type |
prosite |
sequence |
GDVVEIIESRPIS
|
description |
RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS
|
source |
prosite : PS00056
|
|
26)
|
chain |
R |
residue |
32-55 |
type |
prosite |
sequence |
RDYRNVEVLKRFLSETGKILPRRR
|
description |
RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR
|
source |
prosite : PS00057
|
|
27)
|
chain |
R |
residue |
66-81 |
type |
prosite |
sequence |
LAKTIKRARILGLLPF
|
description |
ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF
|
source |
prosite : PS00063
|
|
28)
|
chain |
S |
residue |
53-77 |
type |
prosite |
sequence |
NGKQHVPVYITENMVGHKLGEFAPT
|
description |
RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT
|
source |
prosite : PS00323
|
|
29)
|
chain |
I |
residue |
67-85 |
type |
prosite |
sequence |
GGGKSGQIDAIKLGIARAL
|
description |
RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL
|
source |
prosite : PS00360
|
|
30)
|
chain |
J |
residue |
27-42 |
type |
prosite |
sequence |
ARRSGAQVSGPIPLPT
|
description |
RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT
|
source |
prosite : PS00361
|
|
31)
|
chain |
O |
residue |
39-69 |
type |
prosite |
sequence |
LSEHLKVHKKDHHSHRGLLMMVGQRRRLLRY
|
description |
RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY
|
source |
prosite : PS00362
|
|
32)
|
chain |
N |
residue |
23-45 |
type |
prosite |
sequence |
RCVRCGRARSVYRFFGLCRICLR
|
description |
RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR
|
source |
prosite : PS00527
|
|
33)
|
chain |
C |
residue |
163-197 |
type |
prosite |
sequence |
ARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLG
|
description |
RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG
|
source |
prosite : PS00548
|
|
34)
|
chain |
E |
residue |
23-55 |
type |
prosite |
sequence |
GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAV
|
description |
RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV
|
source |
prosite : PS00585
|
|
35)
|
chain |
D |
residue |
97-121 |
type |
prosite |
sequence |
LESRLDNVVYRLGFAVSRRQARQLV
|
description |
RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
|
source |
prosite : PS00632
|
|
36)
|
chain |
M |
residue |
88-101 |
type |
prosite |
sequence |
RGLRHRRGLPVRGQ
|
description |
RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
|
source |
prosite : PS00646
|
|
37)
|
chain |
B |
residue |
7-18 |
type |
prosite |
sequence |
VKELLEAGVHFG
|
description |
RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG
|
source |
prosite : PS00962
|
|
38)
|
chain |
F |
residue |
44-53 |
type |
prosite |
sequence |
GLRRLAYPIA
|
description |
RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA
|
source |
prosite : PS01048
|
|
39)
|
chain |
N |
residue |
24 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:11866529
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
40)
|
chain |
N |
residue |
27 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:11866529
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
41)
|
chain |
N |
residue |
40 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:11866529
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
42)
|
chain |
N |
residue |
43 |
type |
BINDING |
sequence |
C
|
description |
BINDING => ECO:0000269|PubMed:11866529
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
43)
|
chain |
L |
residue |
92 |
type |
MOD_RES |
sequence |
D
|
description |
3-methylthioaspartic acid => ECO:0000269|PubMed:16287167, ECO:0000269|PubMed:25775268
|
source |
Swiss-Prot : SWS_FT_FI2
|
|