eF-site ID 1gdt-B
PDB Code 1gdt
Chain B

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Title CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA-DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE
Classification DNA BINDING PROTEIN/DNA
Compound SITE I OF RES DNA
Source Escherichia coli (strain K12) (1GDT)
Sequence B:  MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASG
SSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLI
KEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ
RILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG
ASHISKTMNIARSTVYKVINESN
Description


Functional site

1) chain B
residue 161-180
type DNA_BIND
sequence ASHISKTMNIARSTVYKVIN
description H-T-H motif => ECO:0000255
source Swiss-Prot : SWS_FT_FI1

2) chain B
residue 10
type ACT_SITE
sequence S
description O-(5'-phospho-DNA)-serine intermediate => ECO:0000255|PROSITE-ProRule:PRU01072, ECO:0000269|PubMed:6099239
source Swiss-Prot : SWS_FT_FI2


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