|
eF-site ID
|
1gdt-ABCDEF |
PDB Code
|
1gdt |
Chain
|
A, B, C, D, E, F |
|
click to enlarge
|
|
Title
|
CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA-DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE |
Classification
|
DNA BINDING PROTEIN/DNA |
Compound
|
SITE I OF RES DNA |
Source
|
Escherichia coli (strain K12) (1GDT) |
|
Sequence
|
A: |
MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASG
SSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLI
KEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ
RILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG
ASHISKTMNIARSTVYKVINESN
|
B: |
MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASG
SSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLI
KEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ
RILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG
ASHISKTMNIARSTVYKVINESN
|
C: |
GCAGTGTCCGATAATTTATAAA
|
D: |
TTATCGGACACTG
|
E: |
CAGTGTCCGATAATTTATAAA
|
F: |
TTATCGGACACTG
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
6-14 |
type |
prosite |
sequence |
YARVSTSQQ
|
description |
RECOMBINASES_1 Site-specific recombinases active site. YARVSTsqQ
|
source |
prosite : PS00397
|
|
2)
|
chain |
A |
residue |
58-70 |
type |
prosite |
sequence |
GDVILVKKLDRLG
|
description |
RECOMBINASES_2 Site-specific recombinases signature 2. GDviLVkKLDRLG
|
source |
prosite : PS00398
|
|
3)
|
chain |
A |
residue |
161-180 |
type |
DNA_BIND |
sequence |
ASHISKTMNIARSTVYKVIN
|
description |
H-T-H motif => ECO:0000255
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
4)
|
chain |
B |
residue |
161-180 |
type |
DNA_BIND |
sequence |
ASHISKTMNIARSTVYKVIN
|
description |
H-T-H motif => ECO:0000255
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
5)
|
chain |
A |
residue |
10 |
type |
ACT_SITE |
sequence |
S
|
description |
O-(5'-phospho-DNA)-serine intermediate => ECO:0000255|PROSITE-ProRule:PRU01072, ECO:0000269|PubMed:6099239
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
6)
|
chain |
B |
residue |
10 |
type |
ACT_SITE |
sequence |
S
|
description |
O-(5'-phospho-DNA)-serine intermediate => ECO:0000255|PROSITE-ProRule:PRU01072, ECO:0000269|PubMed:6099239
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
|
|