|
|
eF-site ID
|
1gdt-A |
|
PDB Code
|
1gdt |
|
Chain
|
A |
|
click to enlarge
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Title
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CRYSTAL STRUCTURE OF A SITE-SPECIFIC RECOMBINASE, GAMMA-DELTA RESOLVASE COMPLEXED WITH A 34 BP CLEAVAGE SITE |
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Classification
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DNA BINDING PROTEIN/DNA |
|
Compound
|
SITE I OF RES DNA |
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Source
|
null (1GDT) |
|
|
Sequence
|
A: |
MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASG
SSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLI
KEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQ
RILERTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG
ASHISKTMNIARSTVYKVINESN
|
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Description
|
|
Functional site
|
|
|
1)
|
chain |
A |
| residue |
161-180 |
| type |
DNA_BIND |
| sequence |
ASHISKTMNIARSTVYKVIN
|
| description |
H-T-H motif => ECO:0000255
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
2)
|
chain |
A |
| residue |
10 |
| type |
ACT_SITE |
| sequence |
S
|
| description |
O-(5'-phospho-DNA)-serine intermediate => ECO:0000255|PROSITE-ProRule:PRU01072, ECO:0000269|PubMed:6099239
|
| source |
Swiss-Prot : SWS_FT_FI2
|
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3)
|
chain |
A |
| residue |
6-14 |
| type |
prosite |
| sequence |
YARVSTSQQ
|
| description |
RECOMBINASES_1 Site-specific recombinases active site. YARVSTsqQ
|
| source |
prosite : PS00397
|
|
|
4)
|
chain |
A |
| residue |
58-70 |
| type |
prosite |
| sequence |
GDVILVKKLDRLG
|
| description |
RECOMBINASES_2 Site-specific recombinases signature 2. GDviLVkKLDRLG
|
| source |
prosite : PS00398
|
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|
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