eF-site ID 1gdh-A
PDB Code 1gdh
Chain A

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Title CRYSTAL STRUCTURE OF A NAD-DEPENDENT D-GLYCERATE DEHYDROGENASE AT 2.4 ANGSTROMS RESOLUTION
Classification OXIDOREDUCTASE(CHOH (D)-NAD(P)+ (A))
Compound D-GLYCERATE DEHYDROGENASE
Source Hyphomicrobium methylovorum (DHGY_HYPME)
Sequence A:  KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIE
TAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH
IDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG
EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA
LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLL
SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG
DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN
TFLFPHIGSAATQAREDMAHQANDLIDALFGGADMSYALA
Description


Functional site

1) chain A
residue 100
type
sequence G
description BINDING SITE FOR RESIDUE SO4 A 322
source : AC1

2) chain A
residue 101
type
sequence V
description BINDING SITE FOR RESIDUE SO4 A 322
source : AC1

3) chain A
residue 102
type
sequence T
description BINDING SITE FOR RESIDUE SO4 A 322
source : AC1

4) chain A
residue 241
type catalytic
sequence G
description 571
source MCSA : MCSA1

5) chain A
residue 270
type catalytic
sequence P
description 571
source MCSA : MCSA1

6) chain A
residue 288
type catalytic
sequence I
description 571
source MCSA : MCSA1

7) chain A
residue 241
type ACT_SITE
sequence G
description
source Swiss-Prot : SWS_FT_FI1

8) chain A
residue 270
type ACT_SITE
sequence P
description
source Swiss-Prot : SWS_FT_FI1

9) chain A
residue 288
type ACT_SITE
sequence I
description Proton donor
source Swiss-Prot : SWS_FT_FI2

10) chain A
residue 158
type BINDING
sequence I
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

11) chain A
residue 178
type BINDING
sequence T
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

12) chain A
residue 239
type BINDING
sequence A
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

13) chain A
residue 265
type BINDING
sequence V
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

14) chain A
residue 288
type BINDING
sequence I
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

15) chain A
residue 150-177
type prosite
sequence LGIYGFGSIGQALAKRAQGFDMDIDYFD
description D_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. LGIYGfGSIGqalakraqgfdmd.IDyFD
source prosite : PS00065

16) chain A
residue 200-222
type prosite
sequence LLSVSQFFSLNAPSTPETRYFFN
description D_2_HYDROXYACID_DH_2 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. LLsvSQFFsLNaPstpeTryFfN
source prosite : PS00670

17) chain A
residue 229-245
type prosite
sequence LPQGAIVVNTARGDLVD
description D_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. LPqGaIVVNtARGdLVD
source prosite : PS00671


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