eF-site ID 1fjg-BCDEFGHIJKLMNOPQRSTV PDB Code 1fjg Chain B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, V click to enlarge Title STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN Classification RIBOSOME Compound 16S RIBOSOMAL RNA Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence B:  VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQK TMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDD AIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAE C:  GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRG LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG ERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVA EQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAE QARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAY IFLGEV D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVQEN LVIEFYSR E:  DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLG FGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEF GASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELG SRNPINIAYATMEALRQLRTKADVERLRKG F:  MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKV EELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELR IRDNVRRVMVVKSQEPFLANA G:  ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAAR IFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVG GANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIA HELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW H:  MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILA REGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVI HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT DREARKLGVGGELICEVW I:  EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLV RAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARR APQYSKR J:  KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT RVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTI EQLMTLDLPTGVEIEIKT K:  KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGY KGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS L:  PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVT PKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVL IRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK PKEAA M:  ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINP ATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK KAPRK N:  ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCR ICLRELAHKGQLPGVRKASW O:  PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE HLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRAL IEKLGIRG P:  MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYD PRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVF RQE Q:  PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKK YLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR MDLVEKYLIRRQNYQSLSKRGGKA R:  PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRR TGLSGKEQRILAKTIKRARILGLLPFTEKLVRK S:  PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIV PEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYR GHGK T:  RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEG KAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK VRQLLEAAGAPLIGGGLSA V:  GKGDRRTRRGKIWRGTYGKYRPRK Description (1)  INHIBITED 30S RIBOSOMAL SUBUNIT Functional site 1) chain V residue 5 type sequence D description BINDING SITE FOR RESIDUE MG A 1606 source : GC1 2) chain D residue 82 type sequence A description BINDING SITE FOR RESIDUE MG D 215 source : GC6 3) chain D residue 83 type sequence S description BINDING SITE FOR RESIDUE MG D 215 source : GC6 4) chain D residue 85 type sequence K description BINDING SITE FOR RESIDUE MG D 215 source : GC6 5) chain D residue 87 type sequence G description BINDING SITE FOR RESIDUE MG D 215 source : GC6 6) chain D residue 89 type sequence T description BINDING SITE FOR RESIDUE MG D 215 source : GC6 7) chain L residue 48 type sequence P description BINDING SITE FOR RESIDUE MG A 1612 source : HC1 8) chain L residue 49 type sequence N description BINDING SITE FOR RESIDUE MG A 1612 source : HC1 9) chain Q residue 39 type sequence S description BINDING SITE FOR RESIDUE MG A 1613 source : HC2 10) chain N residue 24 type sequence C description BINDING SITE FOR RESIDUE ZN N 190 source : JC3 11) chain N residue 27 type sequence C description BINDING SITE FOR RESIDUE ZN N 190 source : JC3 12) chain N residue 40 type sequence C description BINDING SITE FOR RESIDUE ZN N 190 source : JC3 13) chain N residue 43 type sequence C description BINDING SITE FOR RESIDUE ZN N 190 source : JC3 14) chain D residue 9 type sequence C description BINDING SITE FOR RESIDUE ZN D 300 source : JC4 15) chain D residue 12 type sequence C description BINDING SITE FOR RESIDUE ZN D 300 source : JC4 16) chain D residue 19 type sequence L description BINDING SITE FOR RESIDUE ZN D 300 source : JC4 17) chain D residue 26 type sequence C description BINDING SITE FOR RESIDUE ZN D 300 source : JC4 18) chain D residue 31 type sequence C description BINDING SITE FOR RESIDUE ZN D 300 source : JC4 19) chain E residue 21 type sequence A description BINDING SITE FOR RESIDUE SCM A 1633 source : JC5 20) chain E residue 22 type sequence G description BINDING SITE FOR RESIDUE SCM A 1633 source : JC5 21) chain L residue 46 type sequence K description BINDING SITE FOR RESIDUE SRY A 1634 source : JC6 22) chain L residue 47 type sequence K description BINDING SITE FOR RESIDUE SRY A 1634 source : JC6 23) chain L residue 91 type sequence K description BINDING SITE FOR RESIDUE SRY A 1634 source : JC6 24) chain L residue 92 type MOD_RES sequence D description 3-methylthioaspartic acid => ECO:0000269|PubMed:16287167, ECO:0000269|PubMed:25775268 source Swiss-Prot : SWS_FT_FI2 25) chain N residue 23-45 type prosite sequence RCVRCGRARSVYRFFGLCRICLR description RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR source prosite : PS00527 26) chain Q residue 54-66 type prosite sequence GDVVEIIESRPIS description RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS source prosite : PS00056 27) chain B residue 7-18 type prosite sequence VKELLEAGVHFG description RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG source prosite : PS00962 28) chain K residue 95-117 type prosite sequence IRALQASGLQVKSIVDDTPVPHN description RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN source prosite : PS00054 29) chain E residue 23-55 type prosite sequence GRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAV description RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV source prosite : PS00585 30) chain D residue 97-121 type prosite sequence LESRLDNVVYRLGFAVSRRQARQLV description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV source prosite : PS00632 31) chain S residue 53-77 type prosite sequence NGKQHVPVYITENMVGHKLGEFAPT description RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT source prosite : PS00323 32) chain R residue 32-55 type prosite sequence RDYRNVEVLKRFLSETGKILPRRR description RIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR source prosite : PS00057 33) chain R residue 66-81 type prosite sequence LAKTIKRARILGLLPF description ALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF source prosite : PS00063 34) chain C residue 163-197 type prosite sequence ARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLG description RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG source prosite : PS00548 35) chain O residue 39-69 type prosite sequence LSEHLKVHKKDHHSHRGLLMMVGQRRRLLRY description RIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY source prosite : PS00362 36) chain I residue 67-85 type prosite sequence GGGKSGQIDAIKLGIARAL description RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL source prosite : PS00360 37) chain G residue 20-46 type prosite sequence DVLVTAFINKIMRDGKKNLAARIFYDA description RIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA source prosite : PS00052 38) chain H residue 108-125 type prosite sequence GIAILSTSKGVLTDREAR description RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR source prosite : PS00053 39) chain F residue 44-53 type prosite sequence GLRRLAYPIA description RIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA source prosite : PS01048 40) chain L residue 46-53 type prosite sequence KKPNSALR description RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR source prosite : PS00055 41) chain J residue 27-42 type prosite sequence ARRSGAQVSGPIPLPT description RIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT source prosite : PS00361 42) chain M residue 88-101 type prosite sequence RGLRHRRGLPVRGQ description RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ source prosite : PS00646 43) chain N residue 24 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 44) chain N residue 27 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 45) chain N residue 40 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1 46) chain N residue 43 type BINDING sequence C description BINDING => ECO:0000269|PubMed:11866529 source Swiss-Prot : SWS_FT_FI1

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