eF-site ID 1fa0-AB
PDB Code 1fa0
Chain A, B

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Title STRUCTURE OF YEAST POLY(A) POLYMERASE BOUND TO MANGANATE AND 3'-DATP
Classification TRANSFERASE
Compound POLY(A)-POLYMERASE
Source Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (PAP_YEAST)
Sequence A:  SQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETE
QETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGG
KIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDS
LLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ
PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVP
KPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR
ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPL
QVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK
VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYL
EITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIA
HPFTKPFESSYCCPTEDDYEMIQDKLKLVTDENKEEESIK
DAPKAYLSTMYIGLDFNIENKKEKVDIHIPCTEFVNLCRS
FNEDYGDHKVFNLALRFVKGYDLPDEVFD
B:  SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFET
EQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAG
GKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFD
SLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLD
QPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELV
PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVA
RICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGP
LQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTK
KVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFY
LEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKI
AHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALK
LVTPKAYLSTMYIGLDFNIVDIHIPCTEFVNLCRSFNEDY
GDHKVFNLALRFVKGYDLPDEVFDENEKRPS
Description


Functional site

1) chain A
residue 100
type
sequence D
description BINDING SITE FOR RESIDUE MN A 600
source : AC1

2) chain A
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE MN A 600
source : AC1

3) chain A
residue 100
type
sequence D
description BINDING SITE FOR RESIDUE MN A 601
source : AC2

4) chain A
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE MN A 601
source : AC2

5) chain A
residue 154
type
sequence D
description BINDING SITE FOR RESIDUE MN A 601
source : AC2

6) chain B
residue 89
type
sequence S
description BINDING SITE FOR RESIDUE MN B 602
source : AC3

7) chain B
residue 100
type
sequence D
description BINDING SITE FOR RESIDUE MN B 602
source : AC3

8) chain B
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE MN B 602
source : AC3

9) chain B
residue 100
type
sequence D
description BINDING SITE FOR RESIDUE MN B 603
source : AC4

10) chain B
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE MN B 603
source : AC4

11) chain B
residue 154
type
sequence D
description BINDING SITE FOR RESIDUE MN B 603
source : AC4

12) chain A
residue 87
type
sequence Y
description BINDING SITE FOR RESIDUE 3AT A 604
source : AC5

13) chain A
residue 88
type
sequence G
description BINDING SITE FOR RESIDUE 3AT A 604
source : AC5

14) chain A
residue 89
type
sequence S
description BINDING SITE FOR RESIDUE 3AT A 604
source : AC5

15) chain A
residue 99
type
sequence S
description BINDING SITE FOR RESIDUE 3AT A 604
source : AC5

16) chain A
residue 100
type
sequence D
description BINDING SITE FOR RESIDUE 3AT A 604
source : AC5

17) chain A
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE 3AT A 604
source : AC5

18) chain B
residue 89
type
sequence S
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

19) chain B
residue 99
type
sequence S
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

20) chain B
residue 100
type
sequence D
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

21) chain B
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

22) chain B
residue 140
type
sequence F
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

23) chain B
residue 215
type
sequence K
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

24) chain B
residue 234
type
sequence V
description BINDING SITE FOR RESIDUE 3AT B 605
source : AC6

25) chain A
residue 87
type
sequence Y
description BINDING SITE FOR RESIDUE 3AD A 606
source : AC7

26) chain A
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE 3AD A 606
source : AC7

27) chain A
residue 141
type
sequence V
description BINDING SITE FOR RESIDUE 3AD A 606
source : AC7

28) chain A
residue 154
type
sequence D
description BINDING SITE FOR RESIDUE 3AD A 606
source : AC7

29) chain A
residue 156
type
sequence I
description BINDING SITE FOR RESIDUE 3AD A 606
source : AC7

30) chain A
residue 186
type
sequence R
description BINDING SITE FOR RESIDUE 3AD A 606
source : AC7

31) chain B
residue 87
type
sequence Y
description BINDING SITE FOR RESIDUE 3AD B 607
source : AC8

32) chain B
residue 102
type
sequence D
description BINDING SITE FOR RESIDUE 3AD B 607
source : AC8

33) chain B
residue 140
type
sequence F
description BINDING SITE FOR RESIDUE 3AD B 607
source : AC8

34) chain B
residue 141
type
sequence V
description BINDING SITE FOR RESIDUE 3AD B 607
source : AC8

35) chain B
residue 154
type
sequence D
description BINDING SITE FOR RESIDUE 3AD B 607
source : AC8

36) chain B
residue 186
type
sequence R
description BINDING SITE FOR RESIDUE 3AD B 607
source : AC8

37) chain A
residue 88
type
sequence G
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

38) chain A
residue 89
type
sequence S
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

39) chain A
residue 92
type
sequence L
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

40) chain A
residue 94
type
sequence V
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

41) chain A
residue 194
type
sequence T
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

42) chain A
residue 211
type
sequence L
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

43) chain A
residue 215
type
sequence K
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

44) chain A
residue 224
type
sequence Y
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

45) chain A
residue 233
type
sequence G
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

46) chain A
residue 234
type
sequence V
description BINDING SITE FOR RESIDUE POP A 817
source : AC9

47) chain A
residue 89
type catalytic
sequence S
description 796
source MCSA : MCSA1

48) chain A
residue 100
type catalytic
sequence D
description 796
source MCSA : MCSA1

49) chain A
residue 102
type catalytic
sequence D
description 796
source MCSA : MCSA1

50) chain A
residue 154
type catalytic
sequence D
description 796
source MCSA : MCSA1

51) chain A
residue 215
type catalytic
sequence K
description 796
source MCSA : MCSA1

52) chain A
residue 224
type catalytic
sequence Y
description 796
source MCSA : MCSA1

53) chain B
residue 89
type catalytic
sequence S
description 796
source MCSA : MCSA2

54) chain B
residue 100
type catalytic
sequence D
description 796
source MCSA : MCSA2

55) chain B
residue 102
type catalytic
sequence D
description 796
source MCSA : MCSA2

56) chain B
residue 154
type catalytic
sequence D
description 796
source MCSA : MCSA2

57) chain B
residue 215
type catalytic
sequence K
description 796
source MCSA : MCSA2

58) chain B
residue 224
type catalytic
sequence Y
description 796
source MCSA : MCSA2

59) chain A
residue 87
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

60) chain B
residue 233
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

61) chain A
residue 99
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

62) chain A
residue 215
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

63) chain A
residue 224
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

64) chain A
residue 233
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

65) chain B
residue 87
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

66) chain B
residue 99
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

67) chain B
residue 215
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

68) chain B
residue 224
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:17850751
source Swiss-Prot : SWS_FT_FI1

69) chain A
residue 100
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

70) chain A
residue 102
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

71) chain A
residue 154
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

72) chain B
residue 100
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

73) chain B
residue 102
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

74) chain B
residue 154
type BINDING
sequence D
description
source Swiss-Prot : SWS_FT_FI2

75) chain A
residue 140
type SITE
sequence F
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

76) chain B
residue 145
type SITE
sequence K
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

77) chain B
residue 294
type SITE
sequence Q
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

78) chain B
residue 314
type SITE
sequence H
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

79) chain B
residue 315
type SITE
sequence N
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

80) chain B
residue 387
type SITE
sequence R
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

81) chain B
residue 392
type SITE
sequence K
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

82) chain B
residue 487
type SITE
sequence E
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

83) chain A
residue 145
type SITE
sequence K
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

84) chain A
residue 294
type SITE
sequence Q
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

85) chain A
residue 314
type SITE
sequence H
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

86) chain A
residue 315
type SITE
sequence N
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

87) chain A
residue 387
type SITE
sequence R
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

88) chain A
residue 392
type SITE
sequence K
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

89) chain A
residue 487
type SITE
sequence E
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

90) chain B
residue 140
type SITE
sequence F
description Interaction with RNA
source Swiss-Prot : SWS_FT_FI3

91) chain A
residue 452
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:18407956
source Swiss-Prot : SWS_FT_FI4


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