eF-site ID 1f6u_14-A
PDB Code 1f6u
Model 14
Chain A

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Title NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition
Classification STRUCTURAL PROTEIN/RNA
Compound HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING
Source Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) (HIV-1) (1F6U)
Sequence A:  MQKGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCG
KEGHQMKDCTERQANX
Description


Functional site

1) chain A
residue 15
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 128
source : AC1

2) chain A
residue 18
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 128
source : AC1

3) chain A
residue 23
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 128
source : AC1

4) chain A
residue 28
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 128
source : AC1

5) chain A
residue 36
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 149
source : AC2

6) chain A
residue 39
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 149
source : AC2

7) chain A
residue 44
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 149
source : AC2

8) chain A
residue 49
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 149
source : AC2

9) chain A
residue 13-30
type ZN_FING
sequence VKCFNCGKEGHIAKNCRA
description CCHC-type 1 => ECO:0000255|PROSITE-ProRule:PRU00047
source Swiss-Prot : SWS_FT_FI1

10) chain A
residue 34-51
type ZN_FING
sequence KGCWKCGKEGHQMKDCTE
description CCHC-type 2 => ECO:0000255|PROSITE-ProRule:PRU00047
source Swiss-Prot : SWS_FT_FI2

11) chain A
residue 55
type SITE
sequence N
description Cleavage; by viral protease => ECO:0000255
source Swiss-Prot : SWS_FT_FI3

12) chain A
residue 10
type MOD_RES
sequence R
description Asymmetric dimethylarginine; in Nucleocapsid protein p7; by host PRMT6 => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

13) chain A
residue 32
type MOD_RES
sequence R
description Asymmetric dimethylarginine; in Nucleocapsid protein p7; by host PRMT6 => ECO:0000250
source Swiss-Prot : SWS_FT_FI4


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