eF-site ID 1dyt-AB
PDB Code 1dyt
Chain A, B

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Title X-ray crystal structure of ECP (RNase 3) at 1.75 A
Classification HYDROLASE
Compound EOSINOPHIL CATIONIC PROTEIN
Source Homo sapiens (Human) (ECP_HUMAN)
Sequence A:  RPPQFTRAQWFAIQHISLNPPRCTIAMRAINNYRWRCKNQ
NTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPL
LHCDLINPGAQNISNCRYADRPGRRFYVVACDNRDPRDSP
RYPVVPVHLDTTI
B:  RPPQFTRAQWFAIQHISLNPPRCTIAMRAINNYRWRCKNQ
NTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPL
LHCDLINPGAQNISNCRYADRPGRRFYVVACDNRDPRDSP
RYPVVPVHLDTTI
Description (1)  EOSINOPHIL CATIONIC PROTEIN (E.C.3.1.27.-)


Functional site

1) chain B
residue 34
type
sequence R
description BINDING SITE FOR RESIDUE FE B 300
source : AC1

2) chain A
residue 46
type
sequence T
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

3) chain A
residue 50
type
sequence N
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

4) chain A
residue 54
type
sequence V
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

5) chain A
residue 74
type
sequence S
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

6) chain A
residue 75
type
sequence R
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

7) chain A
residue 76
type
sequence F
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

8) chain A
residue 78
type
sequence V
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

9) chain A
residue 107
type
sequence Y
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

10) chain B
residue 121
type
sequence R
description BINDING SITE FOR RESIDUE CIT A 301
source : AC3

11) chain A
residue 61
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

12) chain A
residue 66
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

13) chain B
residue 46
type
sequence T
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

14) chain B
residue 50
type
sequence N
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

15) chain B
residue 54
type
sequence V
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

16) chain B
residue 74
type
sequence S
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

17) chain B
residue 75
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

18) chain B
residue 76
type
sequence F
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

19) chain B
residue 78
type
sequence V
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

20) chain B
residue 107
type
sequence Y
description BINDING SITE FOR RESIDUE CIT B 301
source : AC4

21) chain A
residue 34
type
sequence R
description BINDING SITE FOR RESIDUE CIT A 302
source : AC5

22) chain A
residue 38
type
sequence K
description BINDING SITE FOR RESIDUE CIT A 302
source : AC5

23) chain A
residue 39
type
sequence N
description BINDING SITE FOR RESIDUE CIT A 302
source : AC5

24) chain A
residue 40
type
sequence Q
description BINDING SITE FOR RESIDUE CIT A 302
source : AC5

25) chain B
residue 34
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 302
source : AC6

26) chain B
residue 36
type
sequence R
description BINDING SITE FOR RESIDUE CIT B 302
source : AC6

27) chain B
residue 37
type
sequence C
description BINDING SITE FOR RESIDUE CIT B 302
source : AC6

28) chain B
residue 38
type
sequence K
description BINDING SITE FOR RESIDUE CIT B 302
source : AC6

29) chain B
residue 39
type
sequence N
description BINDING SITE FOR RESIDUE CIT B 302
source : AC6

30) chain B
residue 40
type
sequence Q
description BINDING SITE FOR RESIDUE CIT B 302
source : AC6

31) chain A
residue 38
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI3

32) chain B
residue 38
type BINDING
sequence K
description
source Swiss-Prot : SWS_FT_FI3

33) chain A
residue 33
type SITE
sequence Y
description May be involved in LPS-binding
source Swiss-Prot : SWS_FT_FI4

34) chain B
residue 33
type SITE
sequence Y
description May be involved in LPS-binding
source Swiss-Prot : SWS_FT_FI4

35) chain A
residue 15
type ACT_SITE
sequence H
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

36) chain B
residue 15
type ACT_SITE
sequence H
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

37) chain A
residue 128
type ACT_SITE
sequence H
description Proton donor
source Swiss-Prot : SWS_FT_FI2

38) chain B
residue 128
type ACT_SITE
sequence H
description Proton donor
source Swiss-Prot : SWS_FT_FI2

39) chain A
residue 57
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI7

40) chain A
residue 65
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI7

41) chain A
residue 92
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI7

42) chain B
residue 57
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI7

43) chain B
residue 65
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI7

44) chain B
residue 92
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI7

45) chain A
residue 35
type SITE
sequence W
description May be involved in LPS- and LTA-binding
source Swiss-Prot : SWS_FT_FI5

46) chain B
residue 35
type SITE
sequence W
description May be involved in LPS- and LTA-binding
source Swiss-Prot : SWS_FT_FI5

47) chain A
residue 33
type MOD_RES
sequence Y
description 3'-nitrotyrosine => ECO:0000269|PubMed:18694936
source Swiss-Prot : SWS_FT_FI6

48) chain B
residue 33
type MOD_RES
sequence Y
description 3'-nitrotyrosine => ECO:0000269|PubMed:18694936
source Swiss-Prot : SWS_FT_FI6

49) chain A
residue 37-43
type prosite
sequence CKNQNTF
description RNASE_PANCREATIC Pancreatic ribonuclease family signature. CKnqNTF
source prosite : PS00127


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