eF-site ID 1dp7-DP
PDB Code 1dp7
Chain D, P

click to enlarge
Title COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE
Classification TRANSCRIPTION/DNA
Compound DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU)P*GP*GP*TP*AP*AP*CP*G)-3')
Source (1DP7)
Sequence D:  CGXTACCAXGGTAACG
P:  TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNA
ASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA
Description


Functional site

1) chain P
residue 56
type
sequence T
description BINDING SITE FOR RESIDUE EDO P 501
source : AC1

2) chain P
residue 2
type
sequence V
description BINDING SITE FOR RESIDUE EDO P 502
source : AC2

3) chain P
residue 49
type
sequence S
description BINDING SITE FOR RESIDUE EDO P 502
source : AC2

4) chain P
residue 50
type
sequence V
description BINDING SITE FOR RESIDUE EDO P 502
source : AC2

5) chain P
residue 18
type
sequence P
description BINDING SITE FOR RESIDUE PEG P 503
source : AC3

6) chain P
residue 21
type
sequence T
description BINDING SITE FOR RESIDUE PEG P 503
source : AC3

7) chain P
residue 52
type
sequence M
description BINDING SITE FOR RESIDUE PEG P 503
source : AC3

8) chain P
residue 53
type
sequence G
description BINDING SITE FOR RESIDUE PEG P 503
source : AC3

9) chain P
residue 55
type
sequence R
description BINDING SITE FOR RESIDUE PEG P 503
source : AC3

10) chain P
residue 1-76
type DNA_BIND
sequence TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNA
ASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA
description RFX-type winged-helix => ECO:0000255|PROSITE-ProRule:PRU00858
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links