eF-site ID 1dm2-A
PDB Code 1dm2
Chain A

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Title HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR HYMENIALDISINE
Classification CELL CYCLE
Compound CYCLIN-DEPENDENT KINASE 2
Source null (CDK2_HUMAN)
Sequence A:  MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIPSTAI
REISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKK
FMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK
PQNLLINTEGAIKLADFGLVTLWYRAPEILLGCKYYSTAV
DIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE
VVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLS
QMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
Description


Functional site

1) chain A
residue 13
type
sequence G
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

2) chain A
residue 31
type
sequence A
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

3) chain A
residue 64
type
sequence V
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

4) chain A
residue 80
type
sequence F
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

5) chain A
residue 81
type
sequence E
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

6) chain A
residue 82
type
sequence F
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

7) chain A
residue 83
type
sequence L
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

8) chain A
residue 132
type
sequence N
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

9) chain A
residue 134
type
sequence L
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

10) chain A
residue 145
type
sequence D
description BINDING SITE FOR RESIDUE HMD A 400
source : AC1

11) chain A
residue 88
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 401
source : AC2

12) chain A
residue 130
type
sequence P
description BINDING SITE FOR RESIDUE EDO A 401
source : AC2

13) chain A
residue 167
type
sequence W
description BINDING SITE FOR RESIDUE EDO A 401
source : AC2

14) chain A
residue 168
type
sequence Y
description BINDING SITE FOR RESIDUE EDO A 401
source : AC2

15) chain A
residue 195
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 401
source : AC2

16) chain A
residue 91
type
sequence M
description BINDING SITE FOR RESIDUE EDO A 402
source : AC3

17) chain A
residue 92
type
sequence D
description BINDING SITE FOR RESIDUE EDO A 402
source : AC3

18) chain A
residue 195
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 402
source : AC3

19) chain A
residue 199
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 402
source : AC3

20) chain A
residue 136
type
sequence N
description BINDING SITE FOR RESIDUE EDO A 403
source : AC4

21) chain A
residue 137
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 403
source : AC4

22) chain A
residue 257
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 403
source : AC4

23) chain A
residue 261
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 403
source : AC4

24) chain A
residue 137
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 404
source : AC5

25) chain A
residue 265
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 404
source : AC5

26) chain A
residue 268
type
sequence H
description BINDING SITE FOR RESIDUE EDO A 404
source : AC5

27) chain A
residue 294
type
sequence P
description BINDING SITE FOR RESIDUE EDO A 404
source : AC5

28) chain A
residue 295
type
sequence H
description BINDING SITE FOR RESIDUE EDO A 404
source : AC5

29) chain A
residue 296
type
sequence L
description BINDING SITE FOR RESIDUE EDO A 404
source : AC5

30) chain A
residue 10-33
type prosite
sequence IGEGTYGVVYKARNKLTGEVVALK
description PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGEGTYGVVYkArnkltgev..........VALK
source prosite : PS00107

31) chain A
residue 127
type ACT_SITE
sequence D
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

32) chain A
residue 132
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

33) chain A
residue 145
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI3

34) chain A
residue 9
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

35) chain A
residue 88
type SITE
sequence K
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

36) chain A
residue 166
type SITE
sequence L
description CDK7 binding
source Swiss-Prot : SWS_FT_FI4

37) chain A
residue 123-135
type prosite
sequence VLHRDLKPQNLLI
description PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. VlHrDLKpqNLLI
source prosite : PS00108

38) chain A
residue 33
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

39) chain A
residue 81
type BINDING
sequence E
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

40) chain A
residue 86
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

41) chain A
residue 129
type BINDING
sequence K
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

42) chain A
residue 10
type BINDING
sequence I
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:17095507, ECO:0000269|PubMed:21565702
source Swiss-Prot : SWS_FT_FI2

43) chain A
residue 1
type MOD_RES
sequence M
description N-acetylmethionine => ECO:0007744|PubMed:22814378
source Swiss-Prot : SWS_FT_FI5

44) chain A
residue 6
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI6

45) chain A
residue 14
type MOD_RES
sequence T
description Phosphothreonine => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507
source Swiss-Prot : SWS_FT_FI7

46) chain A
residue 15
type MOD_RES
sequence Y
description Phosphotyrosine; by WEE1 => ECO:0000269|PubMed:1396589, ECO:0000269|PubMed:17095507, ECO:0007744|PubMed:19690332
source Swiss-Prot : SWS_FT_FI8

47) chain A
residue 19
type MOD_RES
sequence Y
description Phosphotyrosine => ECO:0007744|PubMed:19369195
source Swiss-Prot : SWS_FT_FI9


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