eF-site ID 1dak-A
PDB Code 1dak
Chain A

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Title DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX REACTION INTERMEDIATE ADP AND MIXED ANHYDRIDE
Classification LIGASE
Compound DETHIOBIOTIN SYNTHETASE
Source Escherichia coli (strain K12) (BIOD_ECOLI)
Sequence A:  SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA
SGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGW
FTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL
GEIPWLAENPENAATGKYINLALL
Description


Functional site

1) chain A
residue 148
type
sequence K
description BINDING SITE FOR RESIDUE PO4 A 803
source : AC1

2) chain A
residue 149
type
sequence L
description BINDING SITE FOR RESIDUE PO4 A 803
source : AC1

3) chain A
residue 183
type
sequence R
description BINDING SITE FOR RESIDUE PO4 A 803
source : AC1

4) chain A
residue 184
type
sequence H
description BINDING SITE FOR RESIDUE PO4 A 803
source : AC1

5) chain A
residue 16
type
sequence T
description BINDING SITE FOR RESIDUE MG A 901
source : AC2

6) chain A
residue 54
type
sequence D
description BINDING SITE FOR RESIDUE MG A 901
source : AC2

7) chain A
residue 115
type
sequence E
description BINDING SITE FOR RESIDUE MG A 901
source : AC2

8) chain A
residue 11
type
sequence T
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

9) chain A
residue 15
type
sequence K
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

10) chain A
residue 37
type
sequence K
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

11) chain A
residue 40
type
sequence A
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

12) chain A
residue 41
type
sequence S
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

13) chain A
residue 54
type
sequence D
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

14) chain A
residue 79
type
sequence P
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

15) chain A
residue 115
type
sequence E
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

16) chain A
residue 117
type
sequence A
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

17) chain A
residue 118
type
sequence G
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

18) chain A
residue 150
type
sequence G
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

19) chain A
residue 151
type
sequence C
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

20) chain A
residue 152
type
sequence I
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

21) chain A
residue 153
type
sequence N
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

22) chain A
residue 187
type
sequence Y
description BINDING SITE FOR RESIDUE DPU A 801
source : AC4

23) chain A
residue 12
type
sequence E
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

24) chain A
residue 13
type
sequence V
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

25) chain A
residue 14
type
sequence G
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

26) chain A
residue 15
type
sequence K
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

27) chain A
residue 16
type
sequence T
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

28) chain A
residue 17
type
sequence V
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

29) chain A
residue 115
type
sequence E
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

30) chain A
residue 175
type
sequence N
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

31) chain A
residue 176
type
sequence D
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

32) chain A
residue 204
type
sequence P
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

33) chain A
residue 205
type
sequence W
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

34) chain A
residue 206
type
sequence L
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

35) chain A
residue 210
type
sequence P
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

36) chain A
residue 211
type
sequence E
description BINDING SITE FOR RESIDUE ADP A 802
source : AC5

37) chain A
residue 38
type ACT_SITE
sequence P
description ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000305|PubMed:9125495
source Swiss-Prot : SWS_FT_FI1

38) chain A
residue 13
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1BS1
source Swiss-Prot : SWS_FT_FI2

39) chain A
residue 17
type BINDING
sequence V
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI3

40) chain A
residue 55
type BINDING
sequence A
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI3

41) chain A
residue 116
type BINDING
sequence G
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI3

42) chain A
residue 42
type BINDING
sequence G
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:7669756, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAE, ECO:0007744|PDB:1DAF, ECO:0007744|PDB:1DAG, ECO:0007744|PDB:1DAH, ECO:0007744|PDB:1DAI, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI4

43) chain A
residue 12
type catalytic
sequence E
description 74
source MCSA : MCSA1

44) chain A
residue 13
type catalytic
sequence V
description 74
source MCSA : MCSA1

45) chain A
residue 16
type catalytic
sequence T
description 74
source MCSA : MCSA1

46) chain A
residue 17
type catalytic
sequence V
description 74
source MCSA : MCSA1

47) chain A
residue 38
type catalytic
sequence P
description 74
source MCSA : MCSA1

48) chain A
residue 42
type catalytic
sequence G
description 74
source MCSA : MCSA1

49) chain A
residue 55
type catalytic
sequence A
description 74
source MCSA : MCSA1

50) chain A
residue 116
type catalytic
sequence G
description 74
source MCSA : MCSA1

51) chain A
residue 188
type BINDING
sequence M
description BINDING => ECO:0000269|PubMed:7669756, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAE, ECO:0007744|PDB:1DAF, ECO:0007744|PDB:1DAG, ECO:0007744|PDB:1DAH, ECO:0007744|PDB:1DAI, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI6

52) chain A
residue 212
type BINDING
sequence N
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:7669756, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAD, ECO:0007744|PDB:1DAF, ECO:0007744|PDB:1DAH, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI7

53) chain A
residue 176
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:7669756, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAD, ECO:0007744|PDB:1DAF, ECO:0007744|PDB:1DAG, ECO:0007744|PDB:1DAH, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI5

54) chain A
residue 205
type BINDING
sequence W
description BINDING => ECO:0000255|HAMAP-Rule:MF_00336, ECO:0000269|PubMed:7669756, ECO:0000269|PubMed:9576910, ECO:0000269|PubMed:9865950, ECO:0007744|PDB:1A82, ECO:0007744|PDB:1BS1, ECO:0007744|PDB:1DAD, ECO:0007744|PDB:1DAF, ECO:0007744|PDB:1DAG, ECO:0007744|PDB:1DAH, ECO:0007744|PDB:1DAK, ECO:0007744|PDB:1DAM
source Swiss-Prot : SWS_FT_FI5


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