|
|
eF-site ID
|
1cl8-B |
|
PDB Code
|
1cl8 |
|
Chain
|
B |
|
click to enlarge
|
|
|
Title
|
A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P) |
|
Classification
|
PROTEIN/DNA |
|
Compound
|
DNA (5'-D(*TP*CP*GP*CP*GP*AP*(PRN)P*TP*TP*CP*GP*CP*G)-3') |
|
Source
|
ORGANISM_SCIENTIFIC: Escherichia coli; |
|
|
Sequence
|
B: |
TCGCGAXTTCGCG
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
B |
| residue |
6 |
| type |
|
| sequence |
A
|
| description |
PROTEIN RECOGNTION RESIDUES INVOLVED IN HYDROGEN BONDING CONTACTS AT THE SITE OF PERTURBATION
|
| source |
: PER
|
|
|
2)
|
chain |
B |
| residue |
7 |
| type |
|
| sequence |
X
|
| description |
PROTEIN RECOGNTION RESIDUES INVOLVED IN HYDROGEN BONDING CONTACTS AT THE SITE OF PERTURBATION
|
| source |
: PER
|
|
|
3)
|
chain |
B |
| residue |
8 |
| type |
|
| sequence |
T
|
| description |
PROTEIN RECOGNTION RESIDUES INVOLVED IN HYDROGEN BONDING CONTACTS AT THE SITE OF PERTURBATION
|
| source |
: PER
|
|
|
4)
|
chain |
B |
| residue |
9 |
| type |
|
| sequence |
T
|
| description |
PROTEIN RECOGNTION RESIDUES INVOLVED IN HYDROGEN BONDING CONTACTS AT THE SITE OF PERTURBATION
|
| source |
: PER
|
|
|
5)
|
chain |
B |
| residue |
5 |
| type |
|
| sequence |
G
|
| description |
DNA RECOGNITION SEQUENCE
|
| source |
: DNA
|
|
|
6)
|
chain |
B |
| residue |
6 |
| type |
|
| sequence |
A
|
| description |
DNA RECOGNITION SEQUENCE
|
| source |
: DNA
|
|
|
7)
|
chain |
B |
| residue |
7 |
| type |
|
| sequence |
X
|
| description |
DNA RECOGNITION SEQUENCE
|
| source |
: DNA
|
|
|
8)
|
chain |
B |
| residue |
8 |
| type |
|
| sequence |
T
|
| description |
DNA RECOGNITION SEQUENCE
|
| source |
: DNA
|
|
|
9)
|
chain |
B |
| residue |
9 |
| type |
|
| sequence |
T
|
| description |
DNA RECOGNITION SEQUENCE
|
| source |
: DNA
|
|
|
10)
|
chain |
B |
| residue |
10 |
| type |
|
| sequence |
C
|
| description |
DNA RECOGNITION SEQUENCE
|
| source |
: DNA
|
|
|
|