|
eF-site ID
|
1brd-A |
PDB Code
|
1brd |
Chain
|
A |
|
click to enlarge
|
|
Title
|
Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy |
Classification
|
PHOTORECEPTOR |
Compound
|
BACTERIORHODOPSIN PRECURSOR |
Source
|
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium) (BACR_HALHA) |
|
Sequence
|
A: |
PEWIWLALGTALMGLGTLYFLVKGMGDAKKFYAITTLVPA
IAFTMYLSMLLGEQNPIYWARYADWLFTTPLLLLDLALLV
GTILALVGADGIMIGTGLVGALTWWAISTAAMLYILYVLF
FGFTSEVASTFKVLRNVTVVLWSAYPVVWLIGNIETLLFM
VLDVSAKVGFGLILLRS
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
A |
residue |
86 |
type |
|
sequence |
W
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
2)
|
chain |
A |
residue |
89 |
type |
|
sequence |
T
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
3)
|
chain |
A |
residue |
90 |
type |
|
sequence |
T
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
4)
|
chain |
A |
residue |
93 |
type |
|
sequence |
L
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
5)
|
chain |
A |
residue |
118 |
type |
|
sequence |
M
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
6)
|
chain |
A |
residue |
138 |
type |
|
sequence |
W
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
7)
|
chain |
A |
residue |
145 |
type |
|
sequence |
M
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
8)
|
chain |
A |
residue |
182 |
type |
|
sequence |
W
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
9)
|
chain |
A |
residue |
185 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
10)
|
chain |
A |
residue |
189 |
type |
|
sequence |
W
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
11)
|
chain |
A |
residue |
212 |
type |
|
sequence |
D
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
12)
|
chain |
A |
residue |
216 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE RET A 249
|
source |
: AC1
|
|
13)
|
chain |
A |
residue |
208-219 |
type |
prosite |
sequence |
FMVLDVSAKVGF
|
description |
BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. FMVLDVsAKvGF
|
source |
prosite : PS00327
|
|
14)
|
chain |
A |
residue |
82-94 |
type |
prosite |
sequence |
RYADWLFTTPLLL
|
description |
BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYaDWlFTTPLLL
|
source |
prosite : PS00950
|
|
15)
|
chain |
A |
residue |
63-79 |
type |
TOPO_DOM |
sequence |
GEQNPIY
|
description |
Extracellular => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
16)
|
chain |
A |
residue |
192-203 |
type |
TOPO_DOM |
sequence |
GNI
|
description |
Extracellular => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
17)
|
chain |
A |
residue |
85 |
type |
SITE |
sequence |
D
|
description |
Primary proton acceptor => ECO:0000305|PubMed:10903866, ECO:0000305|PubMed:10949309, ECO:0000305|PubMed:28008064
|
source |
Swiss-Prot : SWS_FT_FI10
|
|
18)
|
chain |
A |
residue |
216 |
type |
MOD_RES |
sequence |
K
|
description |
N6-(retinylidene)lysine => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:10467143, ECO:0000269|PubMed:10548112, ECO:0000269|PubMed:10903866, ECO:0000269|PubMed:10949307, ECO:0000269|PubMed:10949309, ECO:0000269|PubMed:11829498, ECO:0000269|PubMed:28008064, ECO:0000269|PubMed:6794028, ECO:0000269|PubMed:9287223, ECO:0000269|PubMed:9632391, ECO:0000269|PubMed:9751724, ECO:0007744|PDB:1C3W, ECO:0007744|PDB:1F50, ECO:0007744|PDB:1IW9, ECO:0007744|PDB:1KG8, ECO:0007744|PDB:1KG9, ECO:0007744|PDB:1M0L, ECO:0007744|PDB:1M0M, ECO:0007744|PDB:1O0A, ECO:0007744|PDB:1P8H, ECO:0007744|PDB:1P8U, ECO:0007744|PDB:1Q5J, ECO:0007744|PDB:1QHJ, ECO:0007744|PDB:1QKP, ECO:0007744|PDB:1QM8, ECO:0007744|PDB:1R2N, ECO:0007744|PDB:1R84, ECO:0007744|PDB:1S8J, ECO:0007744|PDB:1TN0, ECO:0007744|PDB:1TN5, ECO:0007744|PDB:1UCQ, ECO:0007744|PDB:1X0I, ECO:0007744|PDB:1X0K, ECO:0007744|PDB:1X0S, ECO:0007744|PDB:1XJI, ECO:0007744|PDB:2AT9, ECO:0007744|PDB:2BRD, ECO:0007744|PDB:2I1X, ECO:0007744|PDB:2I20, ECO:0007744|PDB:2I21, ECO:0007744|PDB:2NTU, ECO:0007744|PDB:2NTW, ECO:0007744|PDB:2WJK, ECO:0007744|PDB:2WJL, ECO:0007744|PDB:2ZFE, ECO:0007744|PDB:2ZZL, ECO:0007744|PDB:3COD, ECO:0007744|PDB:3HAN, ECO:0007744|PDB:3HAO, ECO:0007744|PDB:3HAP, ECO:0007744|PDB:3HAQ, ECO:0007744|PDB:3HAR, ECO:0007744|PDB:3HAS, ECO:0007744|PDB:3NS0, ECO:0007744|PDB:3NSB, ECO:0007744|PDB:3T45, ECO:0007744|PDB:3UTV, ECO:0007744|PDB:3UTW, ECO:0007744|PDB:3UTX, ECO:0007744|PDB:3VHZ, ECO:0007744|PDB:3VI0, ECO:0007744|PDB:4FPD, ECO:0007744|PDB:4HWL, ECO:0007744|PDB:4MD1, ECO:0007744|PDB:4MD2, ECO:0007744|PDB:4X31, ECO:0007744|PDB:4X32, ECO:0007744|PDB:5A44, ECO:0007744|PDB:5A45, ECO:0007744|PDB:5B34, ECO:0007744|PDB:5B6V, ECO:0007744|PDB:5B6W, ECO:0007744|PDB:5B6X, ECO:0007744|PDB:5B6Y, ECO:0007744|PDB:5B6Z, ECO:0007744|PDB:5BR2, ECO:0007744|PDB:5BR5, ECO:0007744|PDB:5H2H, ECO:0007744|PDB:5H2I, ECO:0007744|PDB:5H2J, ECO:0007744|PDB:5H2K, ECO:0007744|PDB:5H2L, ECO:0007744|PDB:5H2M, ECO:0007744|PDB:5H2N, ECO:0007744|PDB:5H2O, ECO:0007744|PDB:5H2P, ECO:0007744|PDB:5J7A
|
source |
Swiss-Prot : SWS_FT_FI12
|
|
19)
|
chain |
A |
residue |
10-29 |
type |
TRANSMEM |
sequence |
WIWLALGTALMGLGTLYFLV
|
description |
Helical; Name=Helix A => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
20)
|
chain |
A |
residue |
30-43 |
type |
TOPO_DOM |
sequence |
KGMGDAKKFY
|
description |
Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
21)
|
chain |
A |
residue |
97-107 |
type |
TOPO_DOM |
sequence |
LALLVGT
|
description |
Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
22)
|
chain |
A |
residue |
155-172 |
type |
TOPO_DOM |
sequence |
GFTSEVASTFK
|
description |
Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
23)
|
chain |
A |
residue |
44-62 |
type |
TRANSMEM |
sequence |
AITTLVPAIAFTMYLSMLL
|
description |
Helical; Name=Helix B => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
24)
|
chain |
A |
residue |
80-96 |
type |
TRANSMEM |
sequence |
WARYADWLFTTPLLLLD
|
description |
Helical; Name=Helix C => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
25)
|
chain |
A |
residue |
108-127 |
type |
TRANSMEM |
sequence |
ILALVGADGIMIGTGLVGAL
|
description |
Helical; Name=Helix D => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI6
|
|
26)
|
chain |
A |
residue |
173-191 |
type |
TRANSMEM |
sequence |
VLRNVTVVLWSAYPVVWLI
|
description |
Helical; Name=Helix F => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
27)
|
chain |
A |
residue |
204-223 |
type |
TRANSMEM |
sequence |
ETLLFMVLDVSAKVGFGLIL
|
description |
Helical; Name=Helix G => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
|
|