|
eF-site ID
|
1bbd-HL |
PDB Code
|
1bbd |
Chain
|
H, L |
|
click to enlarge
|
|
Title
|
THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2 |
Classification
|
IMMUNOGLOBULIN |
Compound
|
IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) |
Source
|
(AAB53774) |
|
Sequence
|
H: |
EVQLQQSGAELVRPGASVKLSCTTSGFNIKDIYIHWVKQR
PEQGLEWIGRLDPANGYTKYDPKFQGKATITVDTSSNTAY
LHLSSLTSEDTAVYYCDGYYSYYDMDYWGPGTSVTVSSAK
TTAPSVYPLAPVCSSVTLGCLVKGYFPEPVTLTWNSGSLS
SGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHP
ASSTKVDKKIEPR
|
L: |
DIVMTQSPSSLTVTTGEKVTMTCKSSQSLLNSRTQKNYLT
WYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLS
ISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAPT
VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE
RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC
EATHKTSTSPIVKSFNRNE
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
L |
residue |
24 |
type |
|
sequence |
K
|
description |
|
source |
: L1
|
|
2)
|
chain |
L |
residue |
25 |
type |
|
sequence |
S
|
description |
|
source |
: L1
|
|
3)
|
chain |
L |
residue |
26 |
type |
|
sequence |
S
|
description |
|
source |
: L1
|
|
4)
|
chain |
L |
residue |
27 |
type |
|
sequence |
Q
|
description |
|
source |
: L1
|
|
5)
|
chain |
L |
residue |
28 |
type |
|
sequence |
S
|
description |
|
source |
: L1
|
|
6)
|
chain |
L |
residue |
29 |
type |
|
sequence |
L
|
description |
|
source |
: L1
|
|
7)
|
chain |
L |
residue |
30 |
type |
|
sequence |
L
|
description |
|
source |
: L1
|
|
8)
|
chain |
L |
residue |
31 |
type |
|
sequence |
N
|
description |
|
source |
: L1
|
|
9)
|
chain |
L |
residue |
32 |
type |
|
sequence |
S
|
description |
|
source |
: L1
|
|
10)
|
chain |
L |
residue |
33 |
type |
|
sequence |
R
|
description |
|
source |
: L1
|
|
11)
|
chain |
L |
residue |
34 |
type |
|
sequence |
T
|
description |
|
source |
: L1
|
|
12)
|
chain |
L |
residue |
35 |
type |
|
sequence |
Q
|
description |
|
source |
: L1
|
|
13)
|
chain |
L |
residue |
36 |
type |
|
sequence |
K
|
description |
|
source |
: L1
|
|
14)
|
chain |
L |
residue |
37 |
type |
|
sequence |
N
|
description |
|
source |
: L1
|
|
15)
|
chain |
L |
residue |
38 |
type |
|
sequence |
Y
|
description |
|
source |
: L1
|
|
16)
|
chain |
L |
residue |
39 |
type |
|
sequence |
L
|
description |
|
source |
: L1
|
|
17)
|
chain |
L |
residue |
40 |
type |
|
sequence |
T
|
description |
|
source |
: L1
|
|
18)
|
chain |
L |
residue |
50 |
type |
|
sequence |
P
|
description |
|
source |
: L2
|
|
19)
|
chain |
L |
residue |
51 |
type |
|
sequence |
K
|
description |
|
source |
: L2
|
|
20)
|
chain |
L |
residue |
52 |
type |
|
sequence |
L
|
description |
|
source |
: L2
|
|
21)
|
chain |
L |
residue |
53 |
type |
|
sequence |
L
|
description |
|
source |
: L2
|
|
22)
|
chain |
L |
residue |
54 |
type |
|
sequence |
I
|
description |
|
source |
: L2
|
|
23)
|
chain |
L |
residue |
55 |
type |
|
sequence |
Y
|
description |
|
source |
: L2
|
|
24)
|
chain |
L |
residue |
56 |
type |
|
sequence |
W
|
description |
|
source |
: L2
|
|
25)
|
chain |
L |
residue |
57 |
type |
|
sequence |
A
|
description |
|
source |
: L2
|
|
26)
|
chain |
L |
residue |
58 |
type |
|
sequence |
S
|
description |
|
source |
: L2
|
|
27)
|
chain |
L |
residue |
59 |
type |
|
sequence |
T
|
description |
|
source |
: L2
|
|
28)
|
chain |
L |
residue |
60 |
type |
|
sequence |
R
|
description |
|
source |
: L2
|
|
29)
|
chain |
L |
residue |
61 |
type |
|
sequence |
E
|
description |
|
source |
: L2
|
|
30)
|
chain |
L |
residue |
62 |
type |
|
sequence |
S
|
description |
|
source |
: L2
|
|
31)
|
chain |
L |
residue |
89 |
type |
|
sequence |
L
|
description |
|
source |
: L3
|
|
32)
|
chain |
L |
residue |
90 |
type |
|
sequence |
A
|
description |
|
source |
: L3
|
|
33)
|
chain |
L |
residue |
91 |
type |
|
sequence |
V
|
description |
|
source |
: L3
|
|
34)
|
chain |
L |
residue |
92 |
type |
|
sequence |
Y
|
description |
|
source |
: L3
|
|
35)
|
chain |
L |
residue |
93 |
type |
|
sequence |
Y
|
description |
|
source |
: L3
|
|
36)
|
chain |
L |
residue |
94 |
type |
|
sequence |
C
|
description |
|
source |
: L3
|
|
37)
|
chain |
L |
residue |
95 |
type |
|
sequence |
Q
|
description |
|
source |
: L3
|
|
38)
|
chain |
L |
residue |
96 |
type |
|
sequence |
N
|
description |
|
source |
: L3
|
|
39)
|
chain |
L |
residue |
97 |
type |
|
sequence |
N
|
description |
|
source |
: L3
|
|
40)
|
chain |
L |
residue |
98 |
type |
|
sequence |
Y
|
description |
|
source |
: L3
|
|
41)
|
chain |
L |
residue |
99 |
type |
|
sequence |
N
|
description |
|
source |
: L3
|
|
42)
|
chain |
L |
residue |
100 |
type |
|
sequence |
Y
|
description |
|
source |
: L3
|
|
43)
|
chain |
L |
residue |
101 |
type |
|
sequence |
P
|
description |
|
source |
: L3
|
|
44)
|
chain |
L |
residue |
102 |
type |
|
sequence |
L
|
description |
|
source |
: L3
|
|
45)
|
chain |
L |
residue |
103 |
type |
|
sequence |
T
|
description |
|
source |
: L3
|
|
46)
|
chain |
H |
residue |
31 |
type |
|
sequence |
D
|
description |
|
source |
: H1
|
|
47)
|
chain |
H |
residue |
32 |
type |
|
sequence |
I
|
description |
|
source |
: H1
|
|
48)
|
chain |
H |
residue |
33 |
type |
|
sequence |
Y
|
description |
|
source |
: H1
|
|
49)
|
chain |
H |
residue |
34 |
type |
|
sequence |
I
|
description |
|
source |
: H1
|
|
50)
|
chain |
H |
residue |
35 |
type |
|
sequence |
H
|
description |
|
source |
: H1
|
|
51)
|
chain |
H |
residue |
50 |
type |
|
sequence |
R
|
description |
|
source |
: H2
|
|
52)
|
chain |
H |
residue |
51 |
type |
|
sequence |
L
|
description |
|
source |
: H2
|
|
53)
|
chain |
H |
residue |
52 |
type |
|
sequence |
D
|
description |
|
source |
: H2
|
|
54)
|
chain |
H |
residue |
53 |
type |
|
sequence |
P
|
description |
|
source |
: H2
|
|
55)
|
chain |
H |
residue |
54 |
type |
|
sequence |
A
|
description |
|
source |
: H2
|
|
56)
|
chain |
H |
residue |
55 |
type |
|
sequence |
N
|
description |
|
source |
: H2
|
|
57)
|
chain |
H |
residue |
56 |
type |
|
sequence |
G
|
description |
|
source |
: H2
|
|
58)
|
chain |
H |
residue |
57 |
type |
|
sequence |
Y
|
description |
|
source |
: H2
|
|
59)
|
chain |
H |
residue |
58 |
type |
|
sequence |
T
|
description |
|
source |
: H2
|
|
60)
|
chain |
H |
residue |
59 |
type |
|
sequence |
K
|
description |
|
source |
: H2
|
|
61)
|
chain |
H |
residue |
60 |
type |
|
sequence |
Y
|
description |
|
source |
: H2
|
|
62)
|
chain |
H |
residue |
61 |
type |
|
sequence |
D
|
description |
|
source |
: H2
|
|
63)
|
chain |
H |
residue |
62 |
type |
|
sequence |
P
|
description |
|
source |
: H2
|
|
64)
|
chain |
H |
residue |
63 |
type |
|
sequence |
K
|
description |
|
source |
: H2
|
|
65)
|
chain |
H |
residue |
64 |
type |
|
sequence |
F
|
description |
|
source |
: H2
|
|
66)
|
chain |
H |
residue |
65 |
type |
|
sequence |
Q
|
description |
|
source |
: H2
|
|
67)
|
chain |
H |
residue |
66 |
type |
|
sequence |
G
|
description |
|
source |
: H2
|
|
68)
|
chain |
H |
residue |
99 |
type |
|
sequence |
Y
|
description |
|
source |
: H3
|
|
69)
|
chain |
H |
residue |
100 |
type |
|
sequence |
Y
|
description |
|
source |
: H3
|
|
70)
|
chain |
H |
residue |
101 |
type |
|
sequence |
S
|
description |
|
source |
: H3
|
|
71)
|
chain |
H |
residue |
102 |
type |
|
sequence |
Y
|
description |
|
source |
: H3
|
|
72)
|
chain |
H |
residue |
103 |
type |
|
sequence |
Y
|
description |
|
source |
: H3
|
|
73)
|
chain |
H |
residue |
104 |
type |
|
sequence |
D
|
description |
|
source |
: H3
|
|
74)
|
chain |
H |
residue |
105 |
type |
|
sequence |
M
|
description |
|
source |
: H3
|
|
75)
|
chain |
H |
residue |
106 |
type |
|
sequence |
D
|
description |
|
source |
: H3
|
|
76)
|
chain |
H |
residue |
107 |
type |
|
sequence |
Y
|
description |
|
source |
: H3
|
|
77)
|
chain |
H |
residue |
33 |
type |
|
sequence |
Y
|
description |
BINDING SITE FOR RESIDUE SO4 H 720
|
source |
: AC1
|
|
78)
|
chain |
H |
residue |
35 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE SO4 H 720
|
source |
: AC1
|
|
79)
|
chain |
H |
residue |
50 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE SO4 H 720
|
source |
: AC1
|
|
80)
|
chain |
L |
residue |
198-204 |
type |
prosite |
sequence |
YTCEATH
|
description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCEATH
|
source |
prosite : PS00290
|
|
|
|