eF-site ID 1ak0-A
PDB Code 1ak0
Chain A

click to enlarge
Title P1 NUCLEASE IN COMPLEX WITH A SUBSTRATE ANALOG
Classification ENDONUCLEASE
Compound P1 NUCLEASE
Source ORGANISM_SCIENTIFIC: Penicillium citrinum;
Sequence A:  WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASI
ASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC
GSSGCSISAIANYTQRVSDSSLSSENHAEALRFLVHFIGD
MTQPLHDEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKL
IGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISE
PITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYDS
VIDTIELQIAKGGYRLANWINEIH
Description (1)  P1 NUCLEASE, ADENOSINE-5'-(DITHIO)PHOSPHATE, THYMIDINE-5'-(DITHIO)PHOSPHATE


Functional site

1) chain A
residue 1
type catalytic
sequence W
description 395
source MCSA : MCSA1

2) chain A
residue 153
type catalytic
sequence D
description 395
source MCSA : MCSA1

3) chain A
residue 6
type catalytic
sequence H
description 395
source MCSA : MCSA1

4) chain A
residue 45
type catalytic
sequence D
description 395
source MCSA : MCSA1

5) chain A
residue 48
type catalytic
sequence R
description 395
source MCSA : MCSA1

6) chain A
residue 60
type catalytic
sequence H
description 395
source MCSA : MCSA1

7) chain A
residue 116
type catalytic
sequence H
description 395
source MCSA : MCSA1

8) chain A
residue 120
type catalytic
sequence D
description 395
source MCSA : MCSA1

9) chain A
residue 126
type catalytic
sequence H
description 395
source MCSA : MCSA1

10) chain A
residue 149
type catalytic
sequence H
description 395
source MCSA : MCSA1

11) chain A
residue 1
type BINDING
sequence W
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

12) chain A
residue 153
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

13) chain A
residue 6
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

14) chain A
residue 15
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

15) chain A
residue 60
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

16) chain A
residue 73
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 116
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

18) chain A
residue 120
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

19) chain A
residue 126
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 149
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 45
type BINDING
sequence D
description BINDING => ECO:0000250|UniProtKB:Q9C9G4
source Swiss-Prot : SWS_FT_FI2

22) chain A
residue 45
type SITE
sequence D
description Important for catalytic activity => ECO:0000250|UniProtKB:P24021
source Swiss-Prot : SWS_FT_FI3

23) chain A
residue 48
type SITE
sequence R
description Important for catalytic activity => ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI4

24) chain A
residue 92
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498, ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI5

25) chain A
residue 138
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498, ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI5

26) chain A
residue 197
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498, ECO:0000269|PubMed:9726413, ECO:0007744|PDB:1AK0
source Swiss-Prot : SWS_FT_FI5

27) chain A
residue 184
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498
source Swiss-Prot : SWS_FT_FI6


Display surface

Download
Links