eF-site ID 108d_8-AB
PDB Code 108d
Model 8
Chain A, B

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Title THE SOLUTION STRUCTURE OF A DNA COMPLEX WITH THE FLUORESCENT BIS INTERCALATOR TOTO DETERMINED BY NMR SPECTROSCOPY
Classification DNA
Compound DNA (5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3')
Source (108D)
Sequence A:  CGCTAGCG
B:  CGCTAGCG
Description (1)  5'-D(*CP*GP*CP*TP*AP*GP*CP*G)-3'


Functional site

1) chain A
residue 3
type
ligand
sequence C
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

2) chain A
residue 4
type
ligand
sequence T
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

3) chain A
residue 5
type
ligand
sequence A
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

4) chain A
residue 6
type
ligand
sequence G
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

5) chain B
residue 3
type
ligand
sequence C
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

6) chain B
residue 4
type
ligand
sequence T
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

7) chain B
residue 5
type
ligand
sequence A
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

8) chain B
residue 6
type
ligand
sequence G
description BINDING SITE FOR RESIDUE TOT A 9
source : AC1

9) chain A
residue 2-7
type binding
ligand TOT: 1,1-(4,4,8,8-TETRAMETHYL-4,8-DIAZAUNDECAMETHYLENE)-BIS-4-3-METHYL-2,3-DIHYDRO-(BENZO-1,3-THIAZOLE)-2-METHYLIDENE)-QUINOLINIUM
sequence GCTAGC
description 1,1-(4,4,8,8-TETRAMETHYL-4,8-DIAZAUNDECAMETHYLENE)-BIS-4-3-METHYL-2,3-DIHYDRO-(BENZO-1,3-THIAZOLE)-2-METHYLIDENE)-QUINOLINIUM binding site
source pdb_hetatom : TOT_108d_A_9

10) chain B
residue 2-8
type binding
ligand TOT: 1,1-(4,4,8,8-TETRAMETHYL-4,8-DIAZAUNDECAMETHYLENE)-BIS-4-3-METHYL-2,3-DIHYDRO-(BENZO-1,3-THIAZOLE)-2-METHYLIDENE)-QUINOLINIUM
sequence GCTAGCG
description 1,1-(4,4,8,8-TETRAMETHYL-4,8-DIAZAUNDECAMETHYLENE)-BIS-4-3-METHYL-2,3-DIHYDRO-(BENZO-1,3-THIAZOLE)-2-METHYLIDENE)-QUINOLINIUM binding site
source pdb_hetatom : TOT_108d_A_9


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