eF-site ID 107d_1-AB
PDB Code 107d
Model 1
Chain A, B

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Title SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX
Classification DNA
Compound DNA (5'-D(*CP*CP*TP*TP*TP*TP*C)-3')
Source (107D)
Sequence A:  CCTTTTC
B:  GAAAAGG
Description (1)  5'-D(*CP*CP*TP*TP*TP*TP*C)-3', 5'-D(*GP*AP*AP*AP*AP*GP*G)-3', DUOCARMYCIN A


Functional site

1) chain A
residue 4
type
ligand
sequence T
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

2) chain A
residue 5
type
ligand
sequence T
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

3) chain A
residue 6
type
ligand
sequence T
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

4) chain A
residue 7
type
ligand
sequence C
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

5) chain B
residue 10
type
ligand
sequence A
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

6) chain B
residue 11
type
ligand
sequence A
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

7) chain B
residue 12
type
ligand
sequence A
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

8) chain B
residue 13
type
ligand
sequence G
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

9) chain B
residue 14
type
ligand
sequence G
description BINDING SITE FOR RESIDUE DUO B 15
source : AC1

10) chain A
residue 2-7
type binding
ligand DUO: 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
sequence CTTTTC
description 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER binding site
source pdb_hetatom : DUO_107d_B_15

11) chain B
residue 8-14
type binding
ligand DUO: 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
sequence GAAAAGG
description 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER binding site
source pdb_hetatom : DUO_107d_B_15


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