QCK

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.44Å
C3'	C4'	sing	1.54Å	1.53Å
C3'	C2'	sing	1.54Å	1.50Å
C4'	C5'	sing	1.53Å	1.53Å
C4'	O4'	sing	1.44Å	1.41Å
C2'	C1'	sing	1.55Å	1.52Å
C5'	O5'	sing	1.43Å	1.40Å
OP2	P	sing	1.61Å	1.61Å
C1'	O4'	sing	1.44Å	1.42Å
C1'	N1	sing	1.47Å	1.48Å
O5'	P	sing	1.61Å	1.61Å
P	OP1	doub	1.48Å	1.61Å
O2	C2	doub	1.22Å	1.26Å
N1	C2	sing	1.34Å	1.44Å
N1	C6	sing	1.37Å	1.37Å
C2	N3	sing	1.35Å	1.39Å
C6	C5	doub	1.35Å	1.40Å
N3	C1	sing	1.47Å	1.50Å
N3	C4	sing	1.35Å	1.43Å
C5	C4	sing	1.42Å	1.40Å
C5	C7	sing	1.51Å	1.51Å
C1	C9	sing	1.51Å	1.52Å
C4	O4	doub	1.22Å	1.24Å
C9	C8	doub	1.35Å	1.42Å	Aromatic
C9	N10	sing	1.35Å	1.37Å	Aromatic
C8	N12	sing	1.34Å	1.34Å	Aromatic
N10	N11	sing	1.29Å	1.42Å	Aromatic
N12	N11	doub	1.29Å	1.43Å	Aromatic
C6	H1	sing	1.08Å	1.08Å
C7	H2	sing	1.09Å	1.10Å
C7	H3	sing	1.09Å	1.10Å
C7	H4	sing	1.09Å	1.10Å
C8	H5	sing	1.08Å	1.08Å
C1	H6	sing	1.09Å	1.10Å
C1	H7	sing	1.09Å	1.10Å
C1'	H8	sing	1.09Å	1.10Å
C2'	H9	sing	1.09Å	1.10Å
C2'	H10	sing	1.09Å	1.10Å
C3'	H11	sing	1.09Å	1.10Å
O3'	H12	sing	0.97Å	0.95Å
C4'	H13	sing	1.09Å	1.10Å
C5'	H14	sing	1.09Å	1.10Å
C5'	H15	sing	1.09Å	1.10Å
OP2	H16	sing	0.97Å	0.95Å
N10	H18	sing	0.97Å	1.00Å
P	OP3	sing	1.61Å	1.60Å
OP3	H17	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C4'	108.8°	110.5°
O3'	C3'	C2'	109.4°	110.5°
O3'	C3'	H11	111.3°	110.6°
C3'	O3'	H12	109.5°	114.0°
C4'	C3'	C2'	106.8°	104.1°
C3'	C4'	C5'	112.2°	110.4°
C3'	C4'	O4'	102.5°	104.8°
C4'	C3'	H11	109.9°	110.5°
C3'	C4'	H13	110.4°	110.4°
C3'	C2'	C1'	103.7°	104.1°
C3'	C2'	H9	110.9°	110.5°
C3'	C2'	H10	110.9°	110.7°
C2'	C3'	H11	110.4°	110.5°
C5'	C4'	O4'	108.9°	110.4°
C4'	C5'	O5'	110.1°	109.5°
C5'	C4'	H13	110.4°	110.3°
C4'	C5'	H14	109.3°	109.5°
C4'	C5'	H15	109.3°	109.5°
C4'	O4'	C1'	108.9°	105.3°
O4'	C4'	H13	112.2°	110.5°
C2'	C1'	O4'	104.6°	104.8°
C2'	C1'	N1	116.2°	110.3°
C2'	C1'	H8	110.1°	110.5°
C1'	C2'	H9	110.9°	110.5°
C1'	C2'	H10	110.9°	110.5°
C5'	O5'	P	120.9°	123.0°
O5'	C5'	H14	109.3°	109.4°
O5'	C5'	H15	109.3°	109.5°
OP2	P	O5'	112.0°	109.4°
OP2	P	OP1	112.2°	109.5°
P	OP2	H16	109.5°	114.0°
OP2	P	OP3	108.4°	109.5°
O4'	C1'	N1	103.3°	110.4°
O4'	C1'	H8	111.6°	110.4°
C1'	N1	C2	118.0°	119.7°
C1'	N1	C6	120.2°	119.7°
N1	C1'	H8	110.7°	110.3°
O5'	P	OP1	112.1°	109.5°
O5'	P	OP3	103.3°	109.5°
OP1	P	OP3	108.4°	109.5°
O2	C2	N1	125.2°	119.5°
O2	C2	N3	114.8°	119.5°
C2	N1	C6	121.7°	120.6°
N1	C2	N3	120.0°	121.0°
N1	C6	C5	119.6°	119.6°
N1	C6	H1	120.2°	120.2°
C2	N3	C1	120.1°	119.9°
C2	N3	C4	116.4°	120.3°
C6	C5	C4	118.8°	119.1°
C6	C5	C7	121.8°	120.4°
C5	C6	H1	120.2°	120.2°
C1	N3	C4	123.5°	119.8°
N3	C1	C9	108.5°	109.5°
N3	C1	H6	109.7°	109.5°
N3	C1	H7	109.7°	109.4°
N3	C4	C5	123.5°	119.4°
N3	C4	O4	115.9°	120.3°
C4	C5	C7	119.4°	120.5°
C5	C4	O4	120.6°	120.3°
C5	C7	H2	109.5°	109.4°
C5	C7	H3	109.5°	109.5°
C5	C7	H4	109.4°	109.5°
C1	C9	C8	125.4°	126.9°
C1	C9	N10	126.0°	126.9°
C9	C1	H6	109.7°	109.5°
C9	C1	H7	109.7°	109.5°
C8	C9	N10	108.6°	106.2°
C9	C8	N12	108.9°	106.5°
C9	C8	H5	125.5°	126.8°
C9	N10	N11	107.3°	108.2°
C9	N10	H18	126.4°	125.9°
C8	N12	N11	108.1°	108.9°
N12	C8	H5	125.5°	126.8°
N10	N11	N12	107.2°	110.2°
N11	N10	H18	126.3°	125.9°
H2	C7	H3	109.4°	109.5°
H2	C7	H4	109.5°	109.5°
H3	C7	H4	109.5°	109.5°
H6	C1	H7	109.5°	109.5°
H9	C2'	H10	109.5°	110.5°
H14	C5'	H15	109.5°	109.5°
P	OP3	H17	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C4'	C2'	118.0°	118.7°
O3'	C3'	C4'	H11	122.2°	122.7°
O3'	C3'	C2'	H11	122.9°	122.7°
O3'	C3'	C4'	C5'	103.9°	98.5°
O3'	C3'	C4'	O4'	139.4°	142.6°
O3'	C3'	C2'	C1'	118.1°	118.6°
O3'	C3'	C2'	H9	122.8°	0.1°
O3'	C3'	C2'	H10	1.0°	122.6°
O3'	C3'	C4'	H13	19.7°	23.7°
C4'	C3'	C2'	H11	119.5°	118.6°
C3'	C4'	C5'	O4'	112.7°	115.4°
C3'	C4'	C5'	H13	123.6°	122.2°
C3'	C4'	O4'	H13	118.4°	118.9°
C4'	C3'	C2'	C1'	0.4°	0.0°
C3'	C4'	C5'	O5'	62.1°	175.0°
C3'	C4'	O4'	C1'	36.3°	40.5°
C4'	C3'	C2'	H9	119.5°	118.6°
C4'	C3'	C2'	H10	118.6°	118.7°
C4'	C3'	O3'	H12	180.0°	180.0°
C3'	C4'	C5'	H14	177.8°	55.0°
C3'	C4'	C5'	H15	58.0°	65.0°
C2'	C3'	C4'	C5'	138.0°	142.8°
C2'	C3'	C4'	O4'	21.4°	23.9°
C3'	C2'	C1'	H9	119.1°	118.6°
C3'	C2'	C1'	H10	119.1°	118.8°
C3'	C2'	C1'	O4'	20.7°	24.0°
C3'	C2'	C1'	N1	133.9°	142.8°
C3'	C2'	C1'	H8	99.3°	94.9°
C3'	C2'	H9	H10	122.7°	122.8°
C2'	C3'	O3'	H12	63.7°	65.3°
C2'	C3'	C4'	H13	98.3°	95.0°
C5'	C4'	O4'	H13	122.6°	122.3°
C4'	C5'	O5'	H14	120.1°	120.0°
C4'	C5'	O5'	H15	120.1°	120.0°
C5'	C4'	O4'	C1'	155.3°	159.3°
C4'	C5'	O5'	P	174.3°	180.0°
C5'	C4'	C3'	H11	18.3°	24.2°
C4'	C5'	H14	H15	119.7°	120.0°
C4'	O4'	C1'	C2'	36.8°	40.5°
O4'	C4'	C5'	O5'	50.7°	69.6°
C4'	O4'	C1'	N1	158.9°	159.3°
C4'	O4'	C1'	H8	82.1°	78.4°
O4'	C4'	C3'	H11	98.4°	94.7°
O4'	C4'	C5'	H14	69.4°	170.4°
O4'	C4'	C5'	H15	170.8°	50.4°
C2'	C1'	O4'	N1	122.1°	118.8°
C2'	C1'	O4'	H8	119.0°	118.9°
C2'	C1'	N1	H8	126.5°	122.4°
C2'	C1'	N1	C2	127.0°	118.2°
C2'	C1'	N1	C6	54.3°	61.6°
C1'	C2'	H9	H10	122.6°	122.6°
C1'	C2'	C3'	H11	119.0°	118.7°
C5'	O5'	P	OP2	19.1°	65.0°
C5'	O5'	P	OP1	108.0°	55.0°
O5'	C5'	C4'	H13	174.3°	52.8°
O5'	C5'	H14	H15	119.7°	120.0°
C5'	O5'	P	OP3	135.5°	175.0°
OP2	P	O5'	OP1	127.1°	120.0°
OP2	P	O5'	OP3	116.4°	120.0°
OP2	P	OP1	OP3	119.6°	120.0°
OP2	P	OP3	H17	122.0°	60.0°
O4'	C1'	N1	H8	119.5°	122.3°
O4'	C1'	N1	C2	119.1°	126.4°
O4'	C1'	N1	C6	59.6°	53.8°
O4'	C1'	C2'	H9	98.4°	142.6°
O4'	C1'	C2'	H10	139.8°	94.8°
C1'	O4'	C4'	H13	82.1°	78.4°
C1'	N1	C2	O2	0.3°	0.3°
C1'	N1	C2	C6	178.7°	179.8°
C1'	N1	C2	N3	179.9°	179.8°
C1'	N1	C6	C5	179.5°	179.8°
C1'	N1	C6	H1	0.5°	0.3°
N1	C1'	C2'	H9	14.8°	98.5°
N1	C1'	C2'	H10	107.1°	24.0°
O5'	P	OP1	OP3	113.4°	120.0°
P	O5'	C5'	H14	54.2°	60.0°
P	O5'	C5'	H15	65.6°	60.0°
O5'	P	OP2	H16	127.1°	60.1°
O5'	P	OP3	H17	119.0°	180.0°
OP1	P	OP2	H16	0.0°	179.9°
OP1	P	OP3	H17	0.0°	60.0°
O2	C2	N1	N3	179.8°	180.0°
O2	C2	N1	C6	178.4°	180.0°
O2	C2	N3	C1	0.1°	0.0°
O2	C2	N3	C4	180.0°	180.0°
C2	N1	C6	C5	1.8°	0.0°
N1	C2	N3	C1	179.9°	180.0°
N1	C2	N3	C4	0.2°	0.0°
C2	N1	C6	H1	178.2°	179.9°
C2	N1	C1'	H8	0.4°	4.2°
C6	N1	C2	N3	1.4°	0.0°
N1	C6	C5	H1	180.0°	180.0°
N1	C6	C5	C4	0.5°	0.1°
N1	C6	C5	C7	178.8°	180.0°
C6	N1	C1'	H8	179.1°	176.1°
C2	N3	C1	C4	179.9°	180.0°
C2	N3	C4	C5	1.6°	0.1°
C2	N3	C1	C9	93.0°	90.0°
C2	N3	C4	O4	178.9°	180.0°
C2	N3	C1	H6	147.2°	30.0°
C2	N3	C1	H7	26.9°	150.0°
C6	C5	C4	N3	1.3°	0.1°
C6	C5	C4	C7	179.3°	179.9°
C6	C5	C4	O4	178.5°	180.0°
C6	C5	C7	H2	180.0°	180.0°
C6	C5	C7	H3	60.0°	60.1°
C6	C5	C7	H4	60.0°	60.0°
C1	N3	C4	C5	178.6°	179.9°
N3	C1	C9	H6	119.8°	120.0°
N3	C1	C9	H7	119.9°	120.0°
C1	N3	C4	O4	1.2°	0.0°
N3	C1	C9	C8	4.1°	95.0°
N3	C1	C9	N10	176.0°	84.9°
N3	C1	H6	H7	120.5°	119.9°
N3	C4	C5	O4	177.2°	179.9°
N3	C4	C5	C7	179.5°	180.0°
C4	N3	C1	C9	87.2°	90.0°
C4	N3	C1	H6	32.7°	150.0°
C4	N3	C1	H7	153.0°	30.0°
C4	C5	C6	H1	179.5°	180.0°
C4	C5	C7	H2	0.8°	0.0°
C4	C5	C7	H3	120.7°	120.0°
C4	C5	C7	H4	119.3°	119.9°
C7	C5	C4	O4	2.2°	0.1°
C7	C5	C6	H1	1.2°	0.1°
C5	C7	H2	H3	120.0°	120.0°
C5	C7	H2	H4	120.0°	120.0°
C5	C7	H3	H4	120.0°	120.1°
C1	C9	C8	N10	179.9°	179.9°
C1	C9	C8	N12	179.8°	180.0°
C1	C9	N10	N11	179.1°	180.0°
C1	C9	C8	H5	0.3°	0.2°
C9	C1	H6	H7	120.4°	120.1°
C1	C9	N10	H18	0.9°	0.1°
C9	C8	N12	H5	180.0°	179.8°
C8	C9	N10	N11	1.0°	0.1°
C9	C8	N12	N11	0.4°	0.0°
C8	C9	C1	H6	115.7°	145.0°
C8	C9	C1	H7	124.0°	25.0°
C8	C9	N10	H18	179.0°	179.9°
N10	C9	C8	N12	0.4°	0.0°
C9	N10	N11	H18	180.0°	179.9°
C9	N10	N11	N12	1.2°	0.0°
N10	C9	C8	H5	179.6°	179.7°
N10	C9	C1	H6	64.2°	35.1°
N10	C9	C1	H7	56.1°	155.1°
C8	N12	N11	N10	1.0°	0.0°
N11	N12	C8	H5	179.6°	179.7°
N12	N11	N10	H18	178.8°	179.9°
H2	C7	H3	H4	120.0°	120.0°
H8	C1'	C2'	H9	141.6°	23.8°
H8	C1'	C2'	H10	19.8°	146.3°
H9	C2'	C3'	H11	0.0°	122.8°
H10	C2'	C3'	H11	121.9°	0.1°
H11	C3'	O3'	H12	58.6°	57.4°
H11	C3'	C4'	H13	141.9°	146.4°
H13	C4'	C5'	H14	54.2°	67.2°
H13	C4'	C5'	H15	65.6°	172.8°
H16	OP2	P	OP3	119.6°	59.9°

Release date:	2021-01-27
Definition date:	2020-06-05
Last modified:	2021-01-22
Release status:	REL
Processing site:	PDBE
Derived from:	6Z8W