N7X

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.48Å
C3'	C2'	sing	1.54Å	1.28Å
C3'	C4'	sing	1.54Å	1.57Å
S	P	doub	1.86Å	2.08Å
C2'	O2'	sing	1.43Å	1.48Å
C2'	C1'	sing	1.55Å	1.64Å
OP2	P	sing	1.61Å	1.56Å
O2'	C	sing	1.43Å	1.44Å
O5'	P	sing	1.61Å	1.67Å
O5'	C5'	sing	1.43Å	1.42Å
C	C1	sing	1.53Å	1.51Å
C5'	C4'	sing	1.53Å	1.41Å
C1	O12	sing	1.43Å	1.47Å
C4'	O4'	sing	1.44Å	1.52Å
N4	C4	sing	1.38Å	1.44Å
N3	C4	doub	1.33Å	1.32Å
N3	C2	sing	1.33Å	1.35Å
C4	C5	sing	1.41Å	1.40Å
O2	C2	doub	1.22Å	1.22Å
C2	N1	sing	1.34Å	1.35Å
C5	C7	sing	1.51Å	1.55Å
C5	C6	doub	1.35Å	1.38Å
N1	C6	sing	1.36Å	1.36Å
N1	C1'	sing	1.47Å	1.45Å
C1'	O4'	sing	1.44Å	1.31Å
O12	C12	sing	1.43Å	1.45Å
C	H1	sing	1.09Å	1.10Å
C	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C1	H4	sing	1.09Å	1.10Å
C1'	H5	sing	1.09Å	1.10Å
C12	H6	sing	1.09Å	1.10Å
C12	H7	sing	1.09Å	1.10Å
C12	H8	sing	1.09Å	1.10Å
C2'	H9	sing	1.09Å	1.10Å
C3'	H10	sing	1.09Å	1.10Å
C4'	H11	sing	1.09Å	1.10Å
C5'	H12	sing	1.09Å	1.10Å
C5'	H13	sing	1.09Å	1.10Å
C6	H14	sing	1.08Å	1.08Å
C7	H15	sing	1.09Å	1.10Å
C7	H16	sing	1.09Å	1.10Å
C7	H17	sing	1.09Å	1.10Å
N4	H18	sing	0.97Å	1.00Å
N4	H19	sing	0.97Å	1.00Å
O3'	HO3'	sing	0.97Å	0.95Å
OP2	HOP2	sing	0.97Å	0.95Å
P	OP3	sing	1.61Å	41.78Å
OP3	HOP3	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C2'	114.8°	110.5°
O3'	C3'	C4'	109.6°	110.5°
O3'	C3'	H10	109.0°	110.5°
C3'	O3'	HO3'	109.5°	114.0°
C2'	C3'	C4'	103.2°	104.1°
C3'	C2'	O2'	113.4°	110.5°
C3'	C2'	C1'	102.8°	104.1°
C3'	C2'	H9	115.0°	110.6°
C2'	C3'	H10	112.1°	110.5°
C3'	C4'	C5'	112.7°	110.4°
C3'	C4'	O4'	99.3°	104.8°
C4'	C3'	H10	107.8°	110.5°
C3'	C4'	H11	110.1°	110.4°
S	P	OP2	120.1°	109.5°
S	P	O5'	106.8°	109.5°
S	P	OP3	76.0°	109.5°
O2'	C2'	C1'	103.8°	110.5°
C2'	O2'	C	111.3°	114.0°
O2'	C2'	H9	111.4°	110.5°
C2'	C1'	N1	112.6°	110.4°
C2'	C1'	O4'	105.4°	104.8°
C2'	C1'	H5	107.0°	110.4°
C1'	C2'	H9	109.3°	110.5°
OP2	P	O5'	109.9°	109.5°
P	OP2	HOP2	109.5°	114.0°
OP2	P	OP3	47.2°	109.5°
O2'	C	C1	107.4°	109.5°
O2'	C	H1	110.0°	109.5°
O2'	C	H2	110.0°	109.4°
P	O5'	C5'	121.6°	123.0°
O5'	P	OP3	144.4°	109.4°
O5'	C5'	C4'	107.3°	109.5°
O5'	C5'	H12	110.0°	109.5°
O5'	C5'	H13	110.0°	109.5°
C	C1	O12	104.2°	109.5°
C1	C	H1	110.0°	109.5°
C1	C	H2	110.0°	109.5°
C	C1	H3	110.8°	109.4°
C	C1	H4	110.8°	109.4°
C5'	C4'	O4'	110.7°	110.3°
C5'	C4'	H11	112.5°	110.4°
C4'	C5'	H12	110.0°	109.4°
C4'	C5'	H13	110.0°	109.5°
C1	O12	C12	114.3°	114.0°
O12	C1	H3	110.8°	109.5°
O12	C1	H4	110.8°	109.5°
C4'	O4'	C1'	108.9°	105.2°
O4'	C4'	H11	110.8°	110.4°
N4	C4	N3	117.3°	120.2°
N4	C4	C5	123.0°	120.2°
C4	N4	H18	120.0°	120.0°
C4	N4	H19	120.0°	120.0°
C4	N3	C2	120.5°	120.7°
N3	C4	C5	119.7°	119.6°
N3	C2	O2	119.8°	119.5°
N3	C2	N1	121.1°	121.1°
C4	C5	C7	120.8°	120.5°
C4	C5	C6	120.1°	119.0°
O2	C2	N1	119.1°	119.4°
C2	N1	C6	120.8°	120.3°
C2	N1	C1'	121.0°	119.9°
C7	C5	C6	119.1°	120.5°
C5	C7	H15	109.5°	109.5°
C5	C7	H16	109.4°	109.4°
C5	C7	H17	109.5°	109.5°
C5	C6	N1	117.8°	119.3°
C5	C6	H14	121.1°	120.4°
C6	N1	C1'	118.2°	119.8°
N1	C6	H14	121.1°	120.3°
N1	C1'	O4'	111.0°	110.3°
N1	C1'	H5	109.3°	110.4°
O4'	C1'	H5	111.5°	110.4°
O12	C12	H6	109.5°	109.5°
O12	C12	H7	109.5°	109.5°
O12	C12	H8	109.5°	109.5°
H1	C	H2	109.5°	109.5°
H3	C1	H4	109.5°	109.5°
H6	C12	H7	109.5°	109.5°
H6	C12	H8	109.5°	109.4°
H7	C12	H8	109.4°	109.5°
H12	C5'	H13	109.5°	109.4°
H15	C7	H16	109.5°	109.5°
H15	C7	H17	109.5°	109.5°
H16	C7	H17	109.5°	109.5°
H18	N4	H19	120.0°	119.9°
P	OP3	HOP3	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C2'	C4'	119.1°	118.6°
O3'	C3'	C2'	H10	125.1°	122.7°
O3'	C3'	C4'	H10	118.5°	122.7°
O3'	C3'	C2'	O2'	50.4°	0.0°
O3'	C3'	C2'	C1'	161.9°	118.6°
O3'	C3'	C4'	C5'	76.4°	98.6°
O3'	C3'	C4'	O4'	166.4°	142.7°
O3'	C3'	C2'	H9	79.5°	122.7°
O3'	C3'	C4'	H11	50.1°	23.8°
C2'	C3'	C4'	H10	118.8°	118.7°
C3'	C2'	O2'	C1'	110.8°	114.6°
C3'	C2'	O2'	H9	131.7°	122.8°
C3'	C2'	C1'	H9	122.6°	118.8°
C3'	C2'	O2'	C	172.6°	95.3°
C2'	C3'	C4'	C5'	160.9°	142.8°
C2'	C3'	C4'	O4'	43.7°	24.0°
C3'	C2'	C1'	N1	92.4°	142.8°
C3'	C2'	C1'	O4'	28.7°	24.0°
C3'	C2'	C1'	H5	147.5°	94.9°
C2'	C3'	C4'	H11	72.6°	94.8°
C2'	C3'	O3'	HO3'	180.0°	180.0°
C4'	C3'	C2'	O2'	68.7°	118.6°
C4'	C3'	C2'	C1'	42.7°	0.0°
C3'	C4'	C5'	O5'	64.4°	175.0°
C3'	C4'	C5'	O4'	110.2°	115.3°
C3'	C4'	C5'	H11	125.2°	122.4°
C3'	C4'	O4'	H11	115.8°	118.9°
C3'	C4'	O4'	C1'	24.1°	40.6°
C4'	C3'	C2'	H9	161.4°	118.7°
C3'	C4'	C5'	H12	55.3°	55.1°
C3'	C4'	C5'	H13	175.9°	64.9°
C4'	C3'	O3'	HO3'	64.5°	65.4°
S	P	OP2	O5'	124.4°	120.1°
S	P	OP2	OP3	23.0°	120.0°
S	P	O5'	OP3	89.2°	120.0°
S	P	O5'	C5'	32.1°	44.9°
S	P	OP2	HOP2	180.0°	60.0°
S	P	OP3	HOP3	90.0°	180.0°
O2'	C2'	C1'	H9	119.0°	122.6°
C2'	O2'	C	C1	168.5°	180.0°
O2'	C2'	C1'	N1	149.2°	98.5°
O2'	C2'	C1'	O4'	89.7°	142.7°
C2'	O2'	C	H1	71.8°	60.0°
C2'	O2'	C	H2	48.8°	60.0°
O2'	C2'	C1'	H5	29.1°	23.8°
O2'	C2'	C3'	H10	175.5°	122.7°
C1'	C2'	O2'	C	76.5°	150.0°
C2'	C1'	O4'	C4'	0.9°	40.5°
C2'	C1'	N1	C2	77.7°	61.9°
C2'	C1'	N1	C6	102.5°	118.1°
C2'	C1'	N1	O4'	117.9°	115.4°
C2'	C1'	N1	H5	118.8°	122.3°
C2'	C1'	O4'	H5	115.7°	118.9°
C1'	C2'	C3'	H10	73.0°	118.7°
OP2	P	O5'	OP3	42.6°	120.0°
OP2	P	O5'	C5'	163.9°	165.0°
OP2	P	OP3	HOP3	90.0°	60.0°
O2'	C	C1	H1	119.7°	120.0°
O2'	C	C1	H2	119.7°	119.9°
O2'	C	C1	O12	72.3°	65.0°
O2'	C	H1	H2	120.9°	120.0°
O2'	C	C1	H3	168.5°	175.0°
O2'	C	C1	H4	46.8°	55.0°
C	O2'	C2'	H9	40.9°	27.4°
P	O5'	C5'	C4'	170.8°	179.9°
P	O5'	C5'	H12	69.6°	60.0°
P	O5'	C5'	H13	51.1°	60.0°
O5'	P	OP2	HOP2	55.6°	180.0°
O5'	P	OP3	HOP3	90.0°	60.0°
O5'	C5'	C4'	H12	119.7°	120.0°
O5'	C5'	C4'	H13	119.7°	120.1°
O5'	C5'	C4'	O4'	45.7°	69.6°
O5'	C5'	C4'	H11	170.4°	52.6°
O5'	C5'	H12	H13	121.0°	120.0°
C5'	O5'	P	OP3	121.3°	75.0°
C	C1	O12	H3	119.1°	120.0°
C	C1	O12	H4	119.1°	120.0°
C	C1	O12	C12	153.2°	180.0°
C1	C	H1	H2	120.9°	120.0°
C	C1	H3	H4	122.4°	119.9°
C5'	C4'	O4'	H11	125.6°	122.3°
C5'	C4'	O4'	C1'	142.7°	159.4°
C5'	C4'	C3'	H10	42.1°	24.1°
C4'	C5'	H12	H13	121.0°	120.0°
O12	C1	C	H1	47.4°	175.0°
O12	C1	C	H2	168.0°	55.0°
O12	C1	H3	H4	122.5°	120.1°
C1	O12	C12	H6	180.0°	59.9°
C1	O12	C12	H7	60.0°	180.0°
C1	O12	C12	H8	60.0°	60.0°
C4'	O4'	C1'	N1	123.0°	159.4°
C4'	O4'	C1'	H5	114.8°	78.3°
O4'	C4'	C3'	H10	75.1°	94.7°
O4'	C4'	C5'	H12	165.4°	170.4°
O4'	C4'	C5'	H13	73.9°	50.4°
N4	C4	N3	C5	179.8°	180.0°
N4	C4	N3	C2	179.8°	180.0°
N4	C4	C5	C7	0.1°	0.1°
N4	C4	C5	C6	180.0°	180.0°
C4	N4	H18	H19	180.0°	180.0°
C4	N3	C2	O2	178.4°	179.7°
C4	N3	C2	N1	0.6°	0.0°
N3	C4	C5	C7	179.8°	180.0°
N3	C4	C5	C6	0.3°	0.0°
N3	C4	N4	H18	0.0°	180.0°
N3	C4	N4	H19	180.0°	0.1°
C2	N3	C4	C5	0.0°	0.0°
N3	C2	O2	N1	179.0°	179.8°
N3	C2	N1	C6	1.4°	0.0°
N3	C2	N1	C1'	178.4°	180.0°
C4	C5	C7	C6	179.9°	179.9°
C4	C5	C6	N1	1.0°	0.0°
C4	C5	C6	H14	179.0°	180.0°
C4	C5	C7	H15	180.0°	0.0°
C4	C5	C7	H16	60.0°	120.0°
C4	C5	C7	H17	60.0°	120.0°
C5	C4	N4	H18	179.7°	0.0°
C5	C4	N4	H19	0.3°	180.0°
O2	C2	N1	C6	177.6°	179.7°
O2	C2	N1	C1'	2.7°	0.3°
C2	N1	C6	C5	1.6°	0.0°
C2	N1	C6	C1'	179.8°	180.0°
C2	N1	C1'	O4'	164.4°	53.5°
C2	N1	C1'	H5	41.1°	175.8°
C2	N1	C6	H14	178.4°	180.0°
C7	C5	C6	N1	179.0°	180.0°
C7	C5	C6	H14	0.9°	0.1°
C5	C7	H15	H16	120.0°	119.9°
C5	C7	H15	H17	120.0°	120.0°
C5	C7	H16	H17	120.0°	120.0°
C5	C6	N1	H14	180.0°	180.0°
C5	C6	N1	C1'	178.2°	180.0°
C6	C5	C7	H15	0.1°	179.9°
C6	C5	C7	H16	119.9°	60.1°
C6	C5	C7	H17	120.1°	59.9°
C6	N1	C1'	O4'	15.3°	126.5°
C6	N1	C1'	H5	138.7°	4.2°
N1	C1'	O4'	H5	122.1°	122.3°
N1	C1'	C2'	H9	30.2°	24.0°
C1'	N1	C6	H14	1.8°	0.0°
O4'	C1'	C2'	H9	151.3°	94.8°
C1'	O4'	C4'	H11	91.7°	78.3°
C12	O12	C1	H3	87.7°	60.1°
C12	O12	C1	H4	34.0°	60.0°
O12	C12	H6	H7	120.0°	120.1°
O12	C12	H6	H8	120.0°	120.0°
O12	C12	H7	H8	120.0°	120.0°
H1	C	C1	H3	71.8°	55.0°
H1	C	C1	H4	166.5°	65.0°
H2	C	C1	H3	48.9°	65.0°
H2	C	C1	H4	72.8°	175.0°
H5	C1'	C2'	H9	89.9°	146.4°
H6	C12	H7	H8	120.0°	119.9°
H9	C2'	C3'	H10	45.6°	0.0°
H10	C3'	C4'	H11	168.6°	146.5°
H10	C3'	O3'	HO3'	53.3°	57.3°
H11	C4'	C5'	H12	70.0°	67.3°
H11	C4'	C5'	H13	50.7°	172.7°
H15	C7	H16	H17	120.0°	120.0°
HOP2	OP2	P	OP3	157.0°	60.0°

Release date:	2021-02-10
Definition date:	2020-02-11
Last modified:	2021-02-05
Release status:	REL
Processing site:	RCSB
Derived from:	6VRD