A7E
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| OP2 | P | sing | 1.61Å | 1.49Å | |
| OP1 | P | doub | 1.48Å | 1.52Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | C4' | sing | 1.54Å | 1.54Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C2' | O2' | sing | 1.43Å | 1.46Å | |
| C2' | C1' | sing | 1.55Å | 1.54Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C25 | C24 | trip | 1.17Å | 1.28Å | |
| C24 | C7 | sing | 1.43Å | 1.33Å | |
| N8 | C7 | doub | 1.31Å | 1.34Å | Aromatic |
| N8 | N9 | sing | 1.40Å | 1.40Å | Aromatic |
| C7 | C5 | sing | 1.46Å | 1.47Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.47Å | |
| N9 | C4 | sing | 1.36Å | 1.33Å | Aromatic |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C5 | C4 | doub | 1.41Å | 1.45Å | Aromatic |
| C5 | C6 | sing | 1.40Å | 1.46Å | Aromatic |
| N6 | C6 | sing | 1.38Å | 1.35Å | |
| C4 | N3 | sing | 1.33Å | 1.35Å | Aromatic |
| C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
| N3 | C2 | doub | 1.31Å | 1.34Å | Aromatic |
| N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| OP2 | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C25 | H7 | sing | 1.05Å | 1.06Å | |
| N6 | H8 | sing | 0.97Å | 1.00Å | |
| N6 | H9 | sing | 0.97Å | 1.00Å | |
| C2 | H10 | sing | 1.08Å | 1.08Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| O2' | H12 | sing | 0.97Å | 0.95Å | |
| C3' | H13 | sing | 1.09Å | 1.10Å | |
| O3' | H14 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 74.35Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 115.9° | 110.5° |
| O3' | C3' | C4' | 111.7° | 110.5° |
| O3' | C3' | H13 | 109.9° | 110.5° |
| C3' | O3' | H14 | 109.5° | 114.0° |
| OP2 | P | OP1 | 115.5° | 109.5° |
| OP2 | P | O5' | 114.5° | 109.5° |
| P | OP2 | H2 | 109.5° | 114.0° |
| OP2 | P | OP3 | 91.6° | 109.5° |
| OP1 | P | O5' | 106.5° | 109.5° |
| OP1 | P | OP3 | 33.9° | 109.5° |
| C2' | C3' | C4' | 101.4° | 104.2° |
| C3' | C2' | O2' | 110.1° | 110.9° |
| C3' | C2' | C1' | 100.6° | 102.1° |
| C3' | C2' | H11 | 109.9° | 110.9° |
| C2' | C3' | H13 | 108.9° | 110.5° |
| C3' | C4' | C5' | 116.7° | 109.9° |
| C3' | C4' | O4' | 106.1° | 107.3° |
| C3' | C4' | H5 | 107.4° | 110.0° |
| C4' | C3' | H13 | 108.6° | 110.4° |
| P | O5' | C5' | 114.2° | 123.0° |
| O5' | P | OP3 | 140.3° | 109.5° |
| O5' | C5' | C4' | 111.1° | 109.5° |
| O5' | C5' | H3 | 109.1° | 109.5° |
| O5' | C5' | H4 | 109.1° | 109.5° |
| C5' | C4' | O4' | 110.1° | 109.9° |
| C4' | C5' | H3 | 109.1° | 109.4° |
| C4' | C5' | H4 | 109.1° | 109.5° |
| C5' | C4' | H5 | 107.7° | 109.8° |
| O2' | C2' | C1' | 115.5° | 110.9° |
| O2' | C2' | H11 | 110.7° | 110.8° |
| C2' | O2' | H12 | 109.5° | 114.0° |
| C2' | C1' | N9 | 108.0° | 110.7° |
| C2' | C1' | O4' | 108.0° | 103.5° |
| C2' | C1' | H6 | 109.7° | 110.6° |
| C1' | C2' | H11 | 109.6° | 110.9° |
| C4' | O4' | C1' | 108.3° | 107.0° |
| O4' | C4' | H5 | 108.7° | 109.9° |
| C25 | C24 | C7 | 178.6° | 179.9° |
| C24 | C25 | H7 | 180.0° | 179.9° |
| C24 | C7 | N8 | 123.5° | 126.3° |
| C24 | C7 | C5 | 124.9° | 126.3° |
| C7 | N8 | N9 | 104.1° | 109.9° |
| N8 | C7 | C5 | 111.6° | 107.3° |
| N8 | N9 | C1' | 116.8° | 125.3° |
| N8 | N9 | C4 | 115.0° | 109.5° |
| C7 | C5 | C4 | 103.4° | 106.4° |
| C7 | C5 | C6 | 140.2° | 135.0° |
| C1' | N9 | C4 | 128.1° | 125.2° |
| N9 | C1' | O4' | 109.0° | 110.6° |
| N9 | C1' | H6 | 110.7° | 110.6° |
| N9 | C4 | C5 | 105.9° | 106.9° |
| N9 | C4 | N3 | 132.9° | 134.5° |
| O4' | C1' | H6 | 111.4° | 110.6° |
| C4 | C5 | C6 | 116.3° | 118.6° |
| C5 | C4 | N3 | 121.2° | 118.6° |
| C5 | C6 | N6 | 119.6° | 120.9° |
| C5 | C6 | N1 | 116.8° | 118.3° |
| N6 | C6 | N1 | 123.6° | 120.8° |
| C6 | N6 | H8 | 109.5° | 119.9° |
| C6 | N6 | H9 | 109.5° | 120.0° |
| C4 | N3 | C2 | 119.9° | 120.7° |
| C6 | N1 | C2 | 123.9° | 121.1° |
| N3 | C2 | N1 | 121.8° | 122.6° |
| N3 | C2 | H10 | 119.1° | 118.7° |
| N1 | C2 | H10 | 119.1° | 118.7° |
| H3 | C5' | H4 | 109.5° | 109.4° |
| H8 | N6 | H9 | 109.5° | 120.0° |
| P | OP3 | HOP3 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | C4' | 121.1° | 118.7° |
| O3' | C3' | C2' | H13 | 124.4° | 122.7° |
| O3' | C3' | C4' | H13 | 121.4° | 122.6° |
| O3' | C3' | C4' | C5' | 78.1° | 119.8° |
| O3' | C3' | C2' | O2' | 36.7° | 20.4° |
| O3' | C3' | C2' | C1' | 159.0° | 97.8° |
| O3' | C3' | C4' | O4' | 158.9° | 120.7° |
| O3' | C3' | C4' | H5 | 42.8° | 1.3° |
| O3' | C3' | C2' | H11 | 85.5° | 144.0° |
| OP2 | P | OP1 | O5' | 128.4° | 120.0° |
| OP2 | P | OP1 | OP3 | 49.2° | 120.0° |
| OP2 | P | O5' | OP3 | 126.8° | 120.0° |
| OP2 | P | O5' | C5' | 42.5° | 65.0° |
| OP2 | P | OP3 | HOP3 | 90.0° | 60.0° |
| OP1 | P | O5' | OP3 | 2.1° | 120.0° |
| OP1 | P | O5' | C5' | 171.4° | 55.0° |
| OP1 | P | OP2 | H2 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 90.0° | 60.0° |
| C2' | C3' | C4' | H13 | 114.6° | 118.7° |
| C2' | C3' | C4' | C5' | 157.9° | 121.5° |
| C3' | C2' | O2' | C1' | 113.0° | 112.7° |
| C3' | C2' | O2' | H11 | 121.7° | 123.7° |
| C3' | C2' | C1' | H11 | 115.7° | 118.2° |
| C2' | C3' | C4' | O4' | 34.9° | 2.0° |
| C3' | C2' | C1' | N9 | 87.7° | 155.6° |
| C3' | C2' | C1' | O4' | 30.1° | 37.0° |
| C2' | C3' | C4' | H5 | 81.2° | 117.4° |
| C3' | C2' | C1' | H6 | 151.6° | 81.5° |
| C3' | C2' | O2' | H12 | 180.0° | 67.3° |
| C2' | C3' | O3' | H14 | 180.0° | 61.4° |
| C3' | C4' | C5' | O5' | 49.5° | 175.7° |
| C3' | C4' | C5' | O4' | 121.0° | 117.8° |
| C3' | C4' | C5' | H5 | 120.8° | 121.2° |
| C4' | C3' | C2' | O2' | 84.4° | 139.1° |
| C4' | C3' | C2' | C1' | 37.9° | 20.9° |
| C3' | C4' | O4' | H5 | 115.2° | 119.6° |
| C3' | C4' | O4' | C1' | 16.4° | 26.5° |
| C3' | C4' | C5' | H3 | 70.7° | 64.3° |
| C3' | C4' | C5' | H4 | 169.8° | 55.7° |
| C4' | C3' | C2' | H11 | 153.4° | 97.3° |
| C4' | C3' | O3' | H14 | 64.5° | 176.3° |
| P | O5' | C5' | C4' | 179.1° | 180.0° |
| O5' | P | OP2 | H2 | 124.3° | 60.0° |
| P | O5' | C5' | H3 | 58.8° | 60.0° |
| P | O5' | C5' | H4 | 60.7° | 60.0° |
| O5' | P | OP3 | HOP3 | 90.0° | 180.0° |
| O5' | C5' | C4' | H3 | 120.2° | 120.0° |
| O5' | C5' | C4' | H4 | 120.2° | 120.1° |
| O5' | C5' | C4' | O4' | 71.4° | 66.4° |
| O5' | C5' | H3 | H4 | 119.3° | 120.0° |
| O5' | C5' | C4' | H5 | 170.3° | 54.6° |
| C5' | O5' | P | OP3 | 169.3° | 175.0° |
| C5' | C4' | O4' | H5 | 117.7° | 121.0° |
| C5' | C4' | O4' | C1' | 143.5° | 146.0° |
| C4' | C5' | H3 | H4 | 119.3° | 120.0° |
| C5' | C4' | C3' | H13 | 43.3° | 2.8° |
| O2' | C2' | C1' | H11 | 125.8° | 123.6° |
| O2' | C2' | C1' | N9 | 153.9° | 86.2° |
| O2' | C2' | C1' | O4' | 88.3° | 155.2° |
| O2' | C2' | C1' | H6 | 33.2° | 36.7° |
| O2' | C2' | C3' | H13 | 161.2° | 102.3° |
| C2' | C1' | O4' | C4' | 8.7° | 40.0° |
| C2' | C1' | N9 | N8 | 94.8° | 70.3° |
| C2' | C1' | N9 | O4' | 117.1° | 114.1° |
| C2' | C1' | N9 | H6 | 120.1° | 122.9° |
| C2' | C1' | N9 | C4 | 80.6° | 109.4° |
| C2' | C1' | O4' | H6 | 120.5° | 118.5° |
| C1' | C2' | O2' | H12 | 67.0° | 180.0° |
| C1' | C2' | C3' | H13 | 76.5° | 139.5° |
| C4' | O4' | C1' | N9 | 108.4° | 158.7° |
| O4' | C4' | C5' | H3 | 168.3° | 53.6° |
| O4' | C4' | C5' | H4 | 48.8° | 173.5° |
| C4' | O4' | C1' | H6 | 129.2° | 78.4° |
| O4' | C4' | C3' | H13 | 79.7° | 116.7° |
| C25 | C24 | C7 | N8 | 174.7° | 131.9° |
| C25 | C24 | C7 | C5 | 5.2° | 48.2° |
| C24 | C7 | N8 | C5 | 179.9° | 179.9° |
| C24 | C7 | N8 | N9 | 179.1° | 180.0° |
| C24 | C7 | C5 | C4 | 179.9° | 179.7° |
| C24 | C7 | C5 | C6 | 0.0° | 0.0° |
| C7 | C24 | C25 | H7 | 131.3° | 163.9° |
| C7 | N8 | N9 | C1' | 177.8° | 180.0° |
| C7 | N8 | N9 | C4 | 1.8° | 0.3° |
| N8 | C7 | C5 | C4 | 0.0° | 0.2° |
| N8 | C7 | C5 | C6 | 179.9° | 180.0° |
| N9 | N8 | C7 | C5 | 1.0° | 0.0° |
| N8 | N9 | C1' | C4 | 175.4° | 179.7° |
| N8 | N9 | C1' | O4' | 22.3° | 43.8° |
| N8 | N9 | C4 | C5 | 1.8° | 0.4° |
| N8 | N9 | C4 | N3 | 178.4° | 179.4° |
| N8 | N9 | C1' | H6 | 145.1° | 166.7° |
| C7 | C5 | C4 | N9 | 1.0° | 0.4° |
| C7 | C5 | C4 | C6 | 179.9° | 179.8° |
| C7 | C5 | C6 | N6 | 0.6° | 0.0° |
| C7 | C5 | C4 | N3 | 179.1° | 179.6° |
| C7 | C5 | C6 | N1 | 179.8° | 179.9° |
| N9 | C1' | O4' | H6 | 122.4° | 122.9° |
| C1' | N9 | C4 | C5 | 177.2° | 179.8° |
| C1' | N9 | C4 | N3 | 2.9° | 0.9° |
| N9 | C1' | C2' | H11 | 28.1° | 37.4° |
| C4 | N9 | C1' | O4' | 162.3° | 136.5° |
| N9 | C4 | C5 | N3 | 179.9° | 179.1° |
| N9 | C4 | C5 | C6 | 179.0° | 179.8° |
| N9 | C4 | N3 | C2 | 178.1° | 179.5° |
| C4 | N9 | C1' | H6 | 39.5° | 13.6° |
| C1' | O4' | C4' | H5 | 98.8° | 93.1° |
| O4' | C1' | C2' | H11 | 145.8° | 81.2° |
| C4 | C5 | C6 | N6 | 179.5° | 179.7° |
| C4 | C5 | C6 | N1 | 0.3° | 0.3° |
| C5 | C4 | N3 | C2 | 1.8° | 0.6° |
| C5 | C6 | N6 | N1 | 179.1° | 180.0° |
| C6 | C5 | C4 | N3 | 0.8° | 0.6° |
| C5 | C6 | N1 | C2 | 0.6° | 0.0° |
| C5 | C6 | N6 | H8 | 179.2° | 0.1° |
| C5 | C6 | N6 | H9 | 59.2° | 180.0° |
| N6 | C6 | N1 | C2 | 179.7° | 180.0° |
| C6 | N6 | H8 | H9 | 120.0° | 179.9° |
| C4 | N3 | C2 | N1 | 1.5° | 0.3° |
| C4 | N3 | C2 | H10 | 178.4° | 179.6° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | N6 | H8 | 0.0° | 179.9° |
| N1 | C6 | N6 | H9 | 120.0° | 0.0° |
| C6 | N1 | C2 | H10 | 179.6° | 180.0° |
| N3 | C2 | N1 | H10 | 180.0° | 180.0° |
| H2 | OP2 | P | OP3 | 25.0° | 60.0° |
| H3 | C5' | C4' | H5 | 50.0° | 174.5° |
| H4 | C5' | C4' | H5 | 69.5° | 65.5° |
| H5 | C4' | C3' | H13 | 164.2° | 123.9° |
| H6 | C1' | C2' | H11 | 92.6° | 160.3° |
| H11 | C2' | O2' | H12 | 58.3° | 56.4° |
| H11 | C2' | C3' | H13 | 39.0° | 21.3° |
| H13 | C3' | O3' | H14 | 56.1° | 61.2° |
