Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PRD_000223
PRD_000223
Name:THIOSTREPTON
Formula:C72 H84 N19 O18 S5
Description:Thiostrepton is a hetrocyclic thiopeptide belonging to the thiocillin family, consisting of four thiazole, one thiozoline and one piperideine rings. A modified quinoline linked to main-chain residue 1 and side-chain of residue 12. Post translational maturation of thiazole and oxazole containing antibiotics involves the enzymic condensation of a Cys or Ser with the alpha-carbonyl of the preceding amino acid to form a thioether or ether bond, then dehydration to form a double bond with the alpha-amino nitrogen. Thiazoline or oxazoline ring are dehydrogenated to form thiazole or oxazole rings. the pyridinyl involves the cross-linking of a Ser and a Cys-Ser pair usually separated by 7 or 8 residues along the peptide chain. The Ser residues are dehydrated to didehydroalanines, then bonded between their beta carbons. The alpha carbonyl of the Cys condenses with alpha carbon of the first Ser to form a pyridinyl ring. The ring may be mutiply dehydrogenated to form a pyridine ring with loss of the amino nitrogen of the first Ser. The amidation of Ser-17 probably does not occur by the same mechanism, oxidative cleavage of glycine, as in eukaryotes.
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000225
PRD_000225
Name:GE2270a
Formula:C56 H58 N15 O10 S6
Description:GEA2270A IS A THIOPEPTIDE CONSISTING OF ONE PYRIDINE, ONE OXAZOLE AND FIVE THIAZOLE RINGS. THE OBSERVED C-TERMINAL AMINO GROUP NH2(15) IS LIKELY TO BE A POST-TRANSLATIONAL DECARBOXYLATED REMNANT OF A SER C-TERMINAL RESIDUE.
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000226
PRD_000226
Name:Viomycin
Formula:C25 H43 N13 O10
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000227
PRD_000227
Name:VIRGINIAMYCIN S1
Formula:C43 H49 N7 O10
Description:VIRGINIAMYCIN S1 IS A CYLIC HEPTAPEPTIDE. THE RING IS GENERATED BY LINKING RESIDUE 2 SIDE-CHAIN AND RESIDUE 7 MAIN-CHAIN.
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000228
PRD_000228
Name:JG-365
Formula:C42 H68 N8 O11
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000229
PRD_000229
Name:(2S)-2-(3,3-dimethylbutanoylamino)-N-[(2S)-1-[[(2S,3S)-3-hydroxy-4-[(4-iodophenyl)methylamino]-4-oxo-butan-2-yl]amino]- 1,4-dioxo-4-pyrrol-1-yl-butan-2-yl]-3,3-dimethyl-butanamide
Formula:C31 H44 I N5 O6
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000230
PRD_000230
Name:N-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-alanylglycinamide
Formula:C12 H22 N4 O5
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000231
PRD_000231
Name:N-acetyl-L-alpha-aspartyl-L-alpha-glutamyl-N-[(1S)-1-(carboxymethyl)-2-oxo-5-phenylpentyl]-L-valinamide
Formula:C29 H40 N4 O11
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000232
PRD_000232
Name:N-[(2S)-2-benzyl-3-sulfanylpropanoyl]-L-alanylglycinamide
Formula:C15 H21 N3 O3 S
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000233
PRD_000233
Name:N-acetyl-3-cyclohexyl-L-alanyl-N~5~-[amino(iminio)methyl]-L-ornithyl-L-alanyl-L-methionyl-S-[(acetylamino)methyl]-L- cysteinyl-L-seryl-L-leucinamide
Formula:C40 H73 N12 O10 S2
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000234
PRD_000234
Name:N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide
Formula:C28 H40 N4 O4 S
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000235
PRD_000235
Name:N-acetyl-L-leucyl-L-alanyl-N-[(1R,2R)-2-hydroxy-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}propyl]-L-alaninamide
Formula:C22 H39 N5 O6
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000236
PRD_000236
Name:N-acetyl-L-alanyl-N-{(1S)-3,3-difluoro-1-(1-methylethyl)-2,4-dioxo-4-[(2-phenylethyl)amino]butyl}-L-prolinamide
Formula:C25 H37 F2 N4 O5
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000237
PRD_000237
Name:N-({1-[(2S)-2-carboxy-4-phenylbutyl]cyclopentyl}carbonyl)-L-tryptophan
Formula:C28 H32 N2 O5
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000238
PRD_000238
Name:Ac-Asp-Glu-Val-Asp-CMK
Formula:C21 H31 Cl N4 O11
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000239
PRD_000239
Name:N-acetyl-L-alpha-aspartyl-L-valyl-N-[(1S)-1-(carboxymethyl)-3-fluoro-2-oxopropyl]-L-alaninamide
Formula:C19 H29 F N4 O9
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000240
PRD_000240
Name:N-acetyl-L-isoleucyl-L-prolyl-L-Phenylalaninal
Formula:C22 H33 N3 O4
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000241
PRD_000241
Name:N-acetyl-L-leucyl-L-alpha-aspartyl-L-alpha-glutamyl-L-seryl-L-aspartic aldehyde
Formula:C24 H39 N5 O13
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000242
PRD_000242
Name:N-acetyl-L-leucyl-L-phenylalanyl-N-[(1S,2R)-1-(2-carboxyethyl)-3-fluoro-2-hydroxypropyl]-L-phenylalaninamide
Formula:C32 H43 F N4 O7
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000243
PRD_000243
Name:N-acetyl-3-(naphthalen-1-yl)-L-alanyl-L-valyl-L-leucyl-L-alanyl-L-alpha-glutamyl-3-naphthalen-1-yl- L-alaninamide
Formula:C47 H59 N7 O9
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000244
PRD_000244
Name:(2R,4S)-N-tert-butyl-1-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutyl]-4-(pyridin-4-ylsulfonyl)piperidine-2-carboxamide
Formula:C35 H46 N4 O6 S
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000245
PRD_000245
Name:1-acetyl-L-prolyl-L-prolyl-L-prolyl-L-valyl-N-(1-methylethyl)glycyl-L-prolyl-N~5~-[amino(iminio)methyl]-L-ornithyl- N~5~-[amino(iminio)methyl]-L-ornithine
Formula:C44 H76 N14 O10
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000246
PRD_000246
Name:N~2~-acetyl-N~5~-[amino(iminio)methyl]-L-ornithyl-L-alpha-glutamyl-N-[(1S)-5-amino-1-(chloroacetyl)pentyl]-N~5~- [amino(iminio)methyl]-L-ornithinamide
Formula:C26 H52 Cl N11 O7
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000247
PRD_000247
Name:N-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4-methylpentanoyl}-L-leucyl-L-phenylalaninamide
Formula:C23 H36 N4 O5
Definition date:2012-12-12
Last modified:2023-09-20
PRD_000249
PRD_000249
Name:N~1~-(3-aminobenzyl)-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-aspartamide
Formula:C18 H27 N5 O5
Definition date:2012-12-12
Last modified:2023-09-20

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon