Author results

5D6H
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CRYSTAL STRUCTURE OF CSUC-CSUA/B CHAPERONE-MAJOR SUBUNIT PRE-ASSEMBLY COMPLEX FROM CSU BIOFILM-MEDIATING PILI OF ACINETOBACTER BAUMANNII
Descriptor:CsuC, CsuA/B
Authors:Pakharukova, N.A., Tuitilla, M., Paavilainen, S., Zavialov, A.
Deposit date:2015-08-12
Release date:2015-11-04
Last modified:2015-12-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insight into Archaic and Alternative Chaperone-Usher Pathways Reveals a Novel Mechanism of Pilus Biogenesis.
Plos Pathog., 11, 2015
1PN6
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DOMAIN-WISE FITTING OF THE CRYSTAL STRUCTURE OF T.THERMOPHILUS EF-G INTO THE LOW RESOLUTION MAP OF THE RELEASE COMPLEX.PUROMYCIN.EFG.GDPNP OF E.COLI 70S RIBOSOME.
Descriptor:Elongation factor G
Authors:Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN7
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COORDINATES OF S12, L11 PROTEINS AND P-TRNA, FROM THE 70S X-RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E.COLI RIBOSOME
Descriptor:P-tRNA, 30S ribosomal protein S12, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1PN8
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COORDINATES OF S12, L11 PROTEINS AND E-SITE TRNA FROM 70S CRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAP OF E.COLI 70S.EF-G.GDPNP COMPLEX. THE ATOMIC COORDINATES ORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THE POSITION OF THE HYBRID P/E-SITE TRNA.
Descriptor:E-tRNA, 30S ribosomal protein S12, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Sengupta, J., Rawat, U., Ehrenberg, M., Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
1QZA
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COORDINATES OF THE A/T SITE TRNA MODEL FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:Phe-tRNA
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZB
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COORDINATES OF THE A-SITE TRNA MODEL FITTED INTO THE CRYO-EM MAP OF 70S RIBOSOME IN THE PRE-TRANSLOCATIONAL STATE
Descriptor:Phe-tRNA
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZC
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COORDINATES OF S12, SH44, LH69 AND SRL SEPARATELY FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:16S rRNA, 23S rRNA, 30S ribosomal protein S12
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1QZD
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EF-TU.KIRROMYCIN COORDINATES FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:Elongation factor Tu
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-16
Release date:2003-11-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1R2W
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COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME
Descriptor:58nts of 23S rRNA, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-30
Release date:2003-11-04
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1R2X
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COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME
Descriptor:58nts of 23S rRNA, 50S ribosomal protein L11
Authors:Valle, M., Zavialov, A., Li, W., Stagg, S.M., Sengupta, J., Nielsen, R.C., Nissen, P., Harvey, S.C., Ehrenberg, M., Frank, J.
Deposit date:2003-09-30
Release date:2003-11-04
Last modified:2013-12-04
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron Microscopy
Nat.Struct.Biol., 10, 2003
1TR7
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FIMH ADHESIN RECEPTOR BINDING DOMAIN FROM UROPATHOGENIC E. COLI
Descriptor:FimH protein, BUTYL ALPHA-D-MANNOPYRANOSIDE, CACODYLATE ION, ...
Authors:Bouckaert, J., Berglund, J., Schembri, M., De Genst, E., Cools, L., Wuhrer, M., Hung, C.S., Pinkner, J., Slattegard, R., Zavialov, A., Choudhury, D., Langermann, S., Hultgren, S.J., Wyns, L., Klemm, P., Oscarson, S., Knight, S.D., De Greve, H.
Deposit date:2004-06-21
Release date:2005-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Receptor binding studies disclose a novel class of high-affinity inhibitors of the Escherichia coli FimH adhesin
Mol.Microbiol., 55, 2005
1UWF
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1.7 A RESOLUTION STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF THE FIMH ADHESIN FROM UROPATHOGENIC E. COLI
Descriptor:FIMH PROTEIN, BUTYL ALPHA-D-MANNOPYRANOSIDE, GLYCEROL
Authors:Bouckaert, J., Berglund, J., Genst, E.D., Cools, L., Hung, C.-S., Wuhrer, M., Zavialov, A., Langermann, S., Hultgren, S., Wyns, L., Oscarson, S., Knight, S.D., De Greve, H.
Deposit date:2004-02-05
Release date:2005-02-16
Last modified:2015-04-15
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Receptor Binding Studies Disclose a Novel Class of High-Affinity Inhibitors of the Escherichia Coli Fimh Adhesin.
Mol.Microbiol., 55, 2005
1ZO1
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IF2, IF1, AND TRNA FITTED TO CRYO-EM DATA OF E. COLI 70S INITIATION COMPLEX
Descriptor:P/I-site tRNA, translation initiation factor 2, translation Initiation Factor 1
Authors:Allen, G.S., Zavialov, A., Gursky, R., Ehrenberg, M., Frank, J.
Deposit date:2005-05-12
Release date:2005-06-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (13.8 Å)
Cite:The Cryo-EM Structure of a Translation Initiation Complex from Escherichia coli.
Cell(Cambridge,Mass.), 121, 2005
1ZO3
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THE P-SITE AND P/E-SITE TRNA STRUCTURES FITTED TO P/I SITE CODON.
Descriptor:tRNA
Authors:Allen, G.S., Zavialov, A., Gursky, R., Ehrenberg, M., Frank, J.
Deposit date:2005-05-12
Release date:2005-06-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (13.8 Å)
Cite:The Cryo-EM Structure of a Translation Initiation Complex from Escherichia coli.
Cell(Cambridge,Mass.), 121, 2005
2FVO
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DOCKING OF THE MODIFIED RF1 X-RAY STRUCTURE INTO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME BOUND WITH RF1
Descriptor:Peptide chain release factor 1
Authors:Rawat, U., Gao, H., Zavialov, A., Gursky, R., Ehrenberg, M., Frank, J.
Deposit date:2006-01-31
Release date:2006-04-04
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:Interactions of the Release Factor RF1 with the Ribosome as Revealed by Cryo-EM.
J.Mol.Biol., 357, 2006
2O0F
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DOCKING OF THE MODIFIED RF3 X-RAY STRUCTURE INTO CRYO-EM MAP OF E.COLI 70S RIBOSOME BOUND WITH RF3
Descriptor:Peptide chain release factor 3
Authors:Gao, H., Zhou, Z., Rawat, U., Huang, C., Bouakaz, L., Wang, C., Liu, Y., Zavialov, A., Gursky, R., Sanyal, S., Ehrenberg, M., Frank, J., Song, H.
Deposit date:2006-11-27
Release date:2007-07-24
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors
Cell(Cambridge,Mass.), 129, 2007
1P5U
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X-RAY STRUCTURE OF THE TERNARY CAF1M:CAF1:CAF1 CHAPERONE:SUBUNIT:SUBUNIT COMPLEX
Descriptor:Chaperone protein Caf1M, F1 capsule antigen
Authors:Zavialov, A.V., Berglund, J., Pudney, A.F., Fooks, L.J., Ibrahim, T.M., MacIntyre, S., Knight, S.D.
Deposit date:2003-04-28
Release date:2003-06-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structure and Biogenesis of the Capsular F1 Antigen from Yersinia pestis. Preserved Folding Energy Drives Fiber Formation
Cell(Cambridge,Mass.), 113, 2003
1P5V
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X-RAY STRUCTURE OF THE CAF1M:CAF1 CHAPERONE:SUBUNIT PREASSEMBLY COMPLEX
Descriptor:Chaperone protein Caf1M, F1 capsule antigen
Authors:Zavialov, A.V., Berglund, J., Pudney, A.F., Fooks, L.J., Ibrahim, T.M., MacIntyre, S., Knight, S.D.
Deposit date:2003-04-28
Release date:2003-06-24
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Biogenesis of the Capsular F1 Antigen from Yersinia pestis. Preserved Folding Energy Drives Fiber Formation
Cell(Cambridge,Mass.), 113, 2003
1ZN1
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COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX
Descriptor:ribosomal 23S RNA, ribosomal 16S RNA, Ribosome recycling factor, ...
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
1ZN0
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COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF
Descriptor:16S RIBOSOMAL RNA, Ribosome recycling factor, ELONGATION FACTOR G
Authors:Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J.
Deposit date:2005-05-11
Release date:2005-06-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (15.5 Å)
Cite:Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
4PH8
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CRYSTAL STRUCTURE OF AGGA, THE MAJOR SUBUNIT OF AGGREGATIVE ADHERENCE FIMBRIAE TYPE I (AAF/I) FROM THE ESCHERICHIA COLI O4H104
Descriptor:Aggregative adherence fimbrial subunit AggA, GLYCEROL
Authors:Pakharukova, N.A., Tuitilla, M., Zavialov, A.V.
Deposit date:2014-05-05
Release date:2014-10-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural Insight into Host Recognition by Aggregative Adherence Fimbriae of Enteroaggregative Escherichia coli.
Plos Pathog., 10, 2014
6FJY
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CRYSTAL STRUCTURE OF CSUC-CSUE CHAPERONE-TIP ADHESION SUBUNIT PRE-ASSEMBLY COMPLEX FROM ARCHAIC CHAPERONE-USHER CSU PILI OF ACINETOBACTER BAUMANNII
Descriptor:CsuC, Protein CsuE
Authors:Pakharukova, N.A., Tuitilla, M., Paavilainen, S., Zavialov, A.V.
Deposit date:2018-01-23
Release date:2018-05-16
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural basis forAcinetobacter baumanniibiofilm formation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2H5E
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CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE RELEASE FACTOR RF3
Descriptor:Peptide chain release factor RF-3, GUANOSINE-5'-DIPHOSPHATE
Authors:Song, H.W., Zhou, Z.H.
Deposit date:2006-05-26
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors
Cell(Cambridge,Mass.), 129, 2007
2Z9Q
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TRANSFER RNA IN THE HYBRID P/E STATE
Descriptor:tRNA
Authors:Frank, J., Li, W.
Deposit date:2007-09-25
Release date:2007-10-16
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Transfer RNA in the hybrid P/E state
To be Published
3EP2
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MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM
Descriptor:Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ...
Authors:Frank, J., Li, W., Agirrezabala, X.
Deposit date:2008-09-29
Release date:2008-12-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008