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5BUN
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CRYSTAL STRUCTURE OF AN ANTIGENIC OUTER MEMBRANE PROTEIN ST50 FROM SALMONELLA TYPHI
Descriptor:Outer membrane protein, B-OCTYLGLUCOSIDE
Authors:Yoshimura, M., Chuankhayan, P., Lin, C.C., Chen, N.C., Yang, M.C., Fun, H.K.
Deposit date:2015-06-04
Release date:2015-12-23
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Crystal structure of an antigenic outer-membrane protein from Salmonella Typhi suggests a potential antigenic loop and an efflux mechanism.
Sci Rep, 5, 2015
4V60
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THE STRUCTURE OF RAT LIVER VAULT AT 3.5 ANGSTROM RESOLUTION
Descriptor:Major vault protein
Authors:Kato, K., Zhou, Y., Tanaka, H., Yao, M., Yamashita, E., Yoshimura, M., Tsukihara, T.
Deposit date:2008-10-24
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structure of rat liver vault at 3.5 angstrom resolution
Science, 323, 2009
1IVU
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CRYSTAL STRUCTURE OF COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS: INITIAL INTERMEDIATE IN TOPAQUINONE BIOGENESIS
Descriptor:amine oxidase, COPPER (II) ION
Authors:Kim, M., Okajima, T., Kishishita, S., Yoshimura, M., Kawamori, A., Tanizawa, K., Yamaguchi, H.
Deposit date:2002-03-29
Release date:2002-08-07
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase.
Nat.Struct.Biol., 9, 2002
1IVV
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CRYSTAL STRUCTURE OF COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS: EARLY INTERMEDIATE IN TOPAQUINONE BIOGENESIS
Descriptor:amine oxidase, COPPER (II) ION
Authors:Kim, M., Okajima, T., Kishishita, S., Yoshimura, M., Kawamori, A., Tanizawa, K., Yamaguchi, H.
Deposit date:2002-03-29
Release date:2002-08-07
Last modified:2011-08-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase.
Nat.Struct.Biol., 9, 2002
1IVW
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CRYSTAL STRUCTURE OF COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS: LATE INTERMEDIATE IN TOPAQUINONE BIOGENESIS
Descriptor:amine oxidase, COPPER (II) ION
Authors:Kim, M., Okajima, T., Kishishita, S., Yoshimura, M., Kawamori, A., Tanizawa, K., Yamaguchi, H.
Deposit date:2002-03-29
Release date:2002-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase
NAT.STRUCT.BIOL., 9, 2002
1IVX
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CRYSTAL STRUCTURE OF COPPER AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS: HOLO FORM GENERATED BY BIOGENESIS IN CRYSTAL.
Descriptor:amine oxidase, COPPER (II) ION
Authors:Kim, M., Okajima, T., Kishishita, S., Yoshimura, M., Kawamori, A., Tanizawa, K., Yamaguchi, H.
Deposit date:2002-03-29
Release date:2002-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray snapshots of quinone cofactor biogenesis in bacterial copper amine oxidase
NAT.STRUCT.BIOL., 9, 2002
1WP1
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CRYSTAL STRUCTURE OF THE DRUG-DISCHARGE OUTER MEMBRANE PROTEIN, OPRM
Descriptor:Outer membrane protein oprM
Authors:Akama, H., Kanemaki, M., Yoshimura, M., Tsukihara, T., Kashiwagi, T., Narita, S., Nakagawa, A., Nakae, T.
Deposit date:2004-08-28
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end
J.Biol.Chem., 279, 2004
5YBW
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CRYSTAL STRUCTURE OF PYRIDOXAL 5'-PHOSPHATE-DEPENDENT ASPARTATE RACEMASE
Descriptor:Aspartate racemase
Authors:Mizobuchi, T., Nonaka, R., Yoshimura, M., Abe, K., Takahashi, S., Kera, Y., Goto, M.
Deposit date:2017-09-05
Release date:2017-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a pyridoxal 5'-phosphate-dependent aspartate racemase derived from the bivalve mollusc Scapharca broughtonii
Acta Crystallogr F Struct Biol Commun, 73, 2017
1O5W
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THE STRUCTURE BASIS OF SPECIFIC RECOGNITIONS FOR SUBSTRATES AND INHIBITORS OF RAT MONOAMINE OXIDASE A
Descriptor:Amine oxidase [flavin-containing] A, FLAVIN-ADENINE DINUCLEOTIDE, N-[3-(2,4-DICHLOROPHENOXY)PROPYL]-N-METHYL-N-PROP-2-YNYLAMINE
Authors:Ma, J., Yoshimura, M., Yamashita, E., Nakagawa, A., Ito, A., Tsukihara, T.
Deposit date:2003-10-06
Release date:2004-04-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of rat monoamine oxidase a and its specific recognitions for substrates and inhibitors.
J.Mol.Biol., 338, 2004
1UKL
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CRYSTAL STRUCTURE OF IMPORTIN-BETA AND SREBP-2 COMPLEX
Descriptor:Importin beta-1 subunit, Sterol regulatory element binding protein-2
Authors:Lee, S.J., Sekimoto, T., Yamashita, E., Nagoshi, E., Nakagawa, A., Imamoto, N., Yoshimura, M., Sakai, H., Tsukihara, T., Yoneda, Y.
Deposit date:2003-08-26
Release date:2003-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Structure of Importin-beta Bound to SREBP-2: Nuclear Import of a Transcription Factor
Science, 302, 2003
1WSR
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CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE SYSTEM
Descriptor:Aminomethyltransferase, SULFATE ION
Authors:Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.
Deposit date:2004-11-10
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
1WSV
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CRYSTAL STRUCTURE OF HUMAN T-PROTEIN OF GLYCINE CLEAVAGE SYSTEM
Descriptor:Aminomethyltransferase, SULFATE ION, N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID
Authors:Okamura-Ikeda, K., Hosaka, H., Yoshimura, M., Yamashita, E., Toma, S., Nakagawa, A., Fujiwara, K., Motokawa, Y., Taniguchi, H.
Deposit date:2004-11-11
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
2Z5X
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CRYSTAL STRUCTURE OF HUMAN MONOAMINE OXIDASE A WITH HARMINE
Descriptor:Amine oxidase [flavin-containing] A, FLAVIN-ADENINE DINUCLEOTIDE, 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE, ...
Authors:Son, S.Y., Ma, J., Yoshimura, M., Tsukihara, T.
Deposit date:2007-07-20
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of human monoamine oxidase A at 2.2-A resolution: The control of opening the entry for substrates/inhibitors
Proc.Natl.Acad.Sci.Usa, 105, 2008
2Z5Y
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CRYSTAL STRUCTURE OF HUMAN MONOAMINE OXIDASE A (G110A) WITH HARMINE
Descriptor:Amine oxidase [flavin-containing] A, FLAVIN-ADENINE DINUCLEOTIDE, 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE, ...
Authors:Son, S.Y., Ma, J., Yoshimura, M., Tsukihara, T.
Deposit date:2007-07-20
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure of human monoamine oxidase A at 2.2-A resolution: The control of opening the entry for substrates/inhibitors
Proc.Natl.Acad.Sci.Usa, 105, 2008
4RFT
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T=1 SUBVIRAL PARTICLE OF GROUPER NERVOUS NECROSIS VIRUS CAPSID PROTEIN DELETION MUTANT (DELTA 1-34 & 218-338)
Descriptor:Coat protein
Authors:Chen, N.C., Chen, C.J., Yoshimura, M., Guan, H.H., Chen, T.Y.
Deposit date:2014-09-27
Release date:2015-10-07
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structures of a Piscine Betanodavirus: Mechanisms of Capsid Assembly and Viral Infection
Plos Pathog., 11, 2015
4RFU
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CRYSTAL STRUCTURE OF TRUNCATED P-DOMAIN FROM GROUPER NERVOUS NECROSIS VIRUS CAPSID PROTEIN AT 1.2A
Descriptor:Coat protein, CALCIUM ION, GLYCEROL, ...
Authors:Chen, N.C., Chen, C.J., Yoshimura, M., Guan, H.H., Chen, T.Y.
Deposit date:2014-09-27
Release date:2015-10-07
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal Structures of a Piscine Betanodavirus: Mechanisms of Capsid Assembly and Viral Infection
Plos Pathog., 11, 2015
4WIZ
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CRYSTAL STRUCTURE OF GROUPER NERVOUS NECROSIS VIRUS-LIKE PARTICLE AT 3.6A
Descriptor:Coat protein, CALCIUM ION
Authors:Chen, N.C., Chen, C.J., Yoshimura, M., Guan, H.H., Chen, T.Y.
Deposit date:2014-09-28
Release date:2015-10-07
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal Structures of a Piscine Betanodavirus: Mechanisms of Capsid Assembly and Viral Infection
Plos Pathog., 11, 2015
5YKU
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH ZN IONS
Descriptor:Capsid protein, ZINC ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKV
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKX
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THE CRYSTAL STRUCTURE OF MACROBRACHIUM ROSENBERGII NODAVIRUS P-DOMAIN WITH CD ION
Descriptor:Capsid protein, CADMIUM ION, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YKZ
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THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P21)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL0
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THE CRYSTAL STRUCTURE OF PENAEUS VANNAMEI NODAVIRUS P-DOMAIN (P212121)
Descriptor:Capsid protein
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-10-24
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
5YL1
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T=1 SUBVIRAL PARTICLE OF PENAEUS VANNAMEI NODAVIRUS CAPSID PROTEIN DELETION MUTANT (DELTA 1-37 & 251-368)
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Yoshimura, M., Lin, C.C., Guan, H.H., Chuankhayan, P., Chen, C.J.
Deposit date:2017-10-16
Release date:2018-12-12
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB5
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CRYO-EM STRUCTURE OF T=1 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
6AB6
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CRYO-EM STRUCTURE OF T=3 PENAEUS VANNAMEI NODAVIRUS
Descriptor:Capsid protein, CALCIUM ION
Authors:Chen, N.C., Miyazaki, N., Yoshimura, M., Guan, H.H., Lin, C.C., Iwasaki, K., Chen, C.J.
Deposit date:2018-07-20
Release date:2019-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
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