Author results

1UCU
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R-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN
Descriptor:phase 1 Flagellin
Authors:Yonekura, K., Maki-Yonekura, S., Namba, K.
Deposit date:2003-04-22
Release date:2003-08-12
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
NATURE, 424, 2003
5GKN
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CATALASE STRUCTURE DETERMINED BY ELECTRON CRYSTALLOGRAPHY OF THIN 3D CRYSTALS
Descriptor:Catalase, PROTOPORPHYRIN IX CONTAINING FE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yonekura, K.
Deposit date:2016-07-04
Release date:2016-10-26
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:Refinement of Cryo-EM Structures Using Scattering Factors of Charged Atoms
J.Appl.Crystallogr., 49, 2016
6JNT
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CATALASE STRUCTURE DETERMINED BY EEFD (DATASET 1)
Descriptor:Catalase, PROTOPORPHYRIN IX CONTAINING FE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yonekura, K., Maki-Yonekura, S.
Deposit date:2019-03-18
Release date:2019-04-24
Last modified:2019-05-22
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:A new cryo-EM system for electron 3D crystallography by eEFD.
J.Struct.Biol., 206, 2019
6JNU
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CATALASE STRUCTURE DETERMINED BY EEFD (DATASET 2)
Descriptor:Catalase, PROTOPORPHYRIN IX CONTAINING FE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yonekura, K., Maki-Yonekura, S.
Deposit date:2019-03-18
Release date:2019-04-24
Last modified:2019-05-22
Method:ELECTRON CRYSTALLOGRAPHY (3.001 Å)
Cite:A new cryo-EM system for electron 3D crystallography by eEFD.
J.Struct.Biol., 206, 2019
3J7T
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CALCIUM ATPASE STRUCTURE WITH TWO BOUND CALCIUM IONS DETERMINED BY ELECTRON CRYSTALLOGRAPHY OF THIN 3D CRYSTALS
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1, CALCIUM ION, SODIUM ION
Authors:Yonekura, K., Kato, K., Ogasawara, M., Tomita, M., Toyoshima, C.
Deposit date:2014-08-07
Release date:2015-02-18
Last modified:2016-09-28
Method:ELECTRON CRYSTALLOGRAPHY (3.4 Å)
Cite:Electron crystallography of ultrathin 3D protein crystals: atomic model with charges
Proc.Natl.Acad.Sci.USA, 112, 2015
5ZFU
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STRUCTURE OF THE EXBB/EXBD HEXAMERIC COMPLEX (EXBB6EXBD3TM)
Descriptor:Biopolymer transport protein ExbB, 22-mer peptide from Biopolymer transport protein ExbD
Authors:Yonekura, K., Yamashita, Y., Matsuoka, R., Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
5ZFV
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STRUCTURE OF THE EXBB/EXBD PENTAMERIC COMPLEX (EXBB5EXBD1TM)
Descriptor:Biopolymer transport protein ExbB, 22-mer peptide from Biopolymer transport protein ExbD
Authors:Yonekura, K., Yamashita, Y., Matsuoka, R., Maki-Yonekura, S.
Deposit date:2018-03-07
Release date:2018-05-09
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
3VU3
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CRYSTAL STRUCTURE OF THE HFQ AND CATALASE HPII COMPLEX
Descriptor:Catalase HPII, Protein hfq, PROTOPORPHYRIN IX CONTAINING FE
Authors:Watanabe, M., Yonekura, K.
Deposit date:2012-06-15
Release date:2013-11-20
Last modified:2013-11-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex
Plos One, 8, 2013
3A5X
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L-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN
Descriptor:Flagellin
Authors:Maki-Yonekura, S., Yonekura, K., Namba, K.
Deposit date:2009-08-13
Release date:2010-03-16
Last modified:2013-10-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Conformational change of flagellin for polymorphic supercoiling of the flagellar filament
Nat.Struct.Mol.Biol., 17, 2010
5ZFP
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STRUCTURE OF THE EXBB/EXBD HEXAMERIC COMPLEX
Descriptor:Biopolymer transport protein ExbB
Authors:Maki-Yonekura, S., Matsuoka, R., Yonekura, K.
Deposit date:2018-03-06
Release date:2018-05-09
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife, 7, 2018
6JJM
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CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE BOUND TO THE OLIGOSACCHARIDE PORTION OF THE GM2 GANGLIOSIDE
Descriptor:HN protein, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
Authors:Kubota, M., Matsuoka, R., Suzuki, T., Yonekura, K., Yanagi, Y., Hashiguchi, T.
Deposit date:2019-02-26
Release date:2019-05-22
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Molecular mechanism of the flexible glycan-receptor recognition by mumps virus
To Be Published
6JJN
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CRYSTAL STRUCTURE OF MUMPS VIRUS HEMAGGLUTININ-NEURAMINIDASE BOUND TO SIALYL LEWISX
Descriptor:HN protein, N-ACETYL-D-GLUCOSAMINE, ALPHA-L-FUCOSE, ...
Authors:Kubota, M., Matsuoka, R., Suzuki, T., Yonekura, K., Yanagi, Y., Hashiguchi, T.
Deposit date:2019-02-26
Release date:2019-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism of the flexible glycan-receptor recognition by mumps virus
To Be Published
1KJU
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CA2+-ATPASE IN THE E2 STATE
Descriptor:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1a
Authors:Xu, C., Rice, W.J., He, W., Stokes, D.L.
Deposit date:2001-12-05
Release date:2001-12-19
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6 Å)
Cite:A structural model for the catalytic cycle of Ca(2+)-ATPase.
J.Mol.Biol., 316, 2002