Author results

2RQR
  • Download 2rqr
  • View 2rqr
Molmil generated image of 2rqr
THE SOLUTION STRUCTURE OF HUMAN DOCK2 SH3 DOMAIN - ELMO1 PEPTIDE CHIMERA COMPLEX
分子名称:Engulfment and cell motility protein 1, linker, Dedicator of cytokinesis protein 2
著者Yokoyama, S., Tochio, N., Koshiba, S., Kigawa, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-10-21
公開日2010-10-27
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献The solution structure of human DOCK2 SH3 domain - ELMO1 peptide chimera complex
To be Published
2DVW
  • Download 2dvw
  • View 2dvw
Molmil generated image of 2dvw
STRUCTURE OF THE ONCOPROTEIN GANKYRIN IN COMPLEX WITH S6 ATPASE OF THE 26S PROTEASOME
分子名称:26S proteasome non-ATPase regulatory subunit 10, 26S protease regulatory subunit 6B
著者Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-03-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Structure, 15, 2007
2DZN
  • Download 2dzn
  • View 2dzn
Molmil generated image of 2dzn
CRYSTAL STRUCTURE ANALYSIS OF YEAST NAS6P COMPLEXED WITH THE PROTEASOME SUBUNIT, RPT3
分子名称:Probable 26S proteasome regulatory subunit p28, 26S protease regulatory subunit 6B homolog
著者Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-29
公開日2007-07-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome
Biochem.Biophys.Res.Commun., 359, 2007
3GQB
  • Download 3gqb
  • View 3gqb
Molmil generated image of 3gqb
CRYSTAL STRUCTURE OF THE A3B3 COMPLEX FROM V-ATPASE
分子名称:V-type ATP synthase alpha chain, V-type ATP synthase beta chain
著者Meher, M., Akimoto, S., Iwata, M., Nagata, K., Hori, Y., Yoshida, M., Yokoyama, S., Iwata, S., Yokoyama, K.
登録日2009-03-24
公開日2009-11-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus.
Embo J., 28, 2009
2EF1
  • Download 2ef1
  • View 2ef1
Molmil generated image of 2ef1
CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN CD38
分子名称:ADP-ribosyl cyclase 1, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
著者Kukimoto-Niino, M., Nureki, O., Murayama, K., Shirouzu, M., Katada, T., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-20
公開日2007-02-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the extracellular domain of human CD38
To be Published
2EG9
  • Download 2eg9
  • View 2eg9
Molmil generated image of 2eg9
CRYSTAL STRUCTURE OF THE TRUNCATED EXTRACELLULAR DOMAIN OF MOUSE CD38
分子名称:ADP-ribosyl cyclase 1
著者Kukimoto-Niino, M., Mishima, C., Wakiyama, M., Terada, T., Shirouzu, M., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-28
公開日2008-03-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the truncated extracellular domain of mouse CD38
To be Published
1J09
  • Download 1j09
  • View 1j09
Molmil generated image of 1j09
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH ATP AND GLU
分子名称:Glutamyl-tRNA synthetase, MAGNESIUM ION, GLUTAMIC ACID, ...
著者Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-11-12
公開日2003-02-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N75
  • Download 1n75
  • View 1n75
Molmil generated image of 1n75
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH ATP.
分子名称:Glutamyl-tRNA synthetase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
著者Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-11-12
公開日2003-02-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N77
  • Download 1n77
  • View 1n77
Molmil generated image of 1n77
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND ATP.
分子名称:tRNA(Glu), Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
著者Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-11-13
公開日2003-02-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N78
  • Download 1n78
  • View 1n78
Molmil generated image of 1n78
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND GLUTAMOL-AMP.
分子名称:tRNA(Glu), Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
著者Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-11-13
公開日2003-02-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
3VA2
  • Download 3va2
  • View 3va2
Molmil generated image of 3va2
CRYSTAL STRUCTURE OF HUMAN INTERLEUKIN-5 IN COMPLEX WITH ITS ALPHA RECEPTOR
分子名称:Interleukin-5, Interleukin-5 receptor subunit alpha
著者Kusano, S., Kukimoto-Niino, M., Shirouzu, M., Yokoyama, S.
登録日2011-12-28
公開日2012-07-25
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Structural basis of interleukin-5 dimer recognition by its alpha receptor
Protein Sci., 21, 2012
1S0V
  • Download 1s0v
  • View 1s0v
Molmil generated image of 1s0v
STRUCTURAL BASIS FOR SUBSTRATE SELECTION BY T7 RNA POLYMERASE
分子名称:5'-D(*G*GP*GP*AP*AP*TP*CP*GP*AP*TP*AP*TP*CP*GP*CP*CP*GP*C)-3', 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3', 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*C)-3', ...
著者Temiakov, D., Patlan, V., Anikin, M., McAllister, W.T., Yokoyama, S., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-01-05
公開日2004-02-24
最終更新日2018-04-04
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis for substrate selection by t7 RNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1IVS
  • Download 1ivs
  • View 1ivs
Molmil generated image of 1ivs
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE
分子名称:tRNA (Val), Valyl-tRNA synthetase, N-[VALINYL]-N'-[ADENOSYL]-DIAMINOSUFONE
著者Fukai, S., Nureki, O., Sekine, S.-I., Shimada, A., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-29
公開日2003-02-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
RNA, 9, 2003
1WQU
  • Download 1wqu
  • View 1wqu
Molmil generated image of 1wqu
SOLUTION STRUCTURE OF THE HUMAN FES SH2 DOMAIN
分子名称:Proto-oncogene tyrosine-protein kinase FES/FPS
著者Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-10-02
公開日2005-06-14
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes
J.Biomol.NMR, 31, 2005
1VDY
  • Download 1vdy
  • View 1vdy
Molmil generated image of 1vdy
NMR STRUCTURE OF THE HYPOTHETICAL ENTH-VHS DOMAIN AT3G16270 FROM ARABIDOPSIS THALIANA
分子名称:hypothetical protein (RAFL09-17-B18)
著者Lopez-Mendez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-25
公開日2005-05-03
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana
To be Published
1VEE
  • Download 1vee
  • View 1vee
Molmil generated image of 1vee
NMR STRUCTURE OF THE HYPOTHETICAL RHODANESE DOMAIN AT4G01050 FROM ARABIDOPSIS THALIANA
分子名称:proline-rich protein family
著者Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K., Yokoyama, S., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-30
公開日2005-01-25
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
Protein Sci., 14, 2005
2DB3
  • Download 2db3
  • View 2db3
Molmil generated image of 2db3
STRUCTURAL BASIS FOR RNA UNWINDING BY THE DEAD-BOX PROTEIN DROSOPHILA VASA
分子名称:5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ATP-dependent RNA helicase vasa, MAGNESIUM ION, ...
著者Sengoku, T., Nureki, O., Nakamura, A., Kobayashi, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-12-14
公開日2006-05-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa.
Cell(Cambridge,Mass.), 125, 2006
3VU8
  • Download 3vu8
  • View 3vu8
Molmil generated image of 3vu8
METIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH METHIONYL-ADENYLATE ANALOGUE
分子名称:Methionine--tRNA ligase, ZINC ION, N-[METHIONYL]-N'-[ADENOSYL]-DIAMINOSULFONE
著者Konno, M., Kato-Murayama, M., Toma-Fukai, S., Uchikawa, E., Nureki, O., Yokoyama, S.
登録日2012-06-22
公開日2013-06-26
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The modeling of structures of specific conformation of homosysteine-AMP leading to thiolactone-formation on class Ia aminoacyl-tRNA synthetases
To be Published
3GEZ
  • Download 3gez
  • View 3gez
Molmil generated image of 3gez
CRYSTAL STRUCTURE OF THE HYPOTHETICAL EGULATOR FROM SULFOLOBUS TOKODAII 7
分子名称:146aa long hypothetical transcriptional regulator, CALCIUM ION
著者Kumarevel, T., Tanaka, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-26
公開日2009-08-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3GF2
  • Download 3gf2
  • View 3gf2
Molmil generated image of 3gf2
CRYSTAL STRUCTURE OF THE HYPOTHETICAL REGULATOR ST1710 COMPLEXED WITH SODIUM SALICYLATE
分子名称:146aa long hypothetical transcriptional regulator, 2-HYDROXYBENZOIC ACID
著者Kumarevel, T., Tanaka, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-26
公開日2009-08-25
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3GFJ
  • Download 3gfj
  • View 3gfj
Molmil generated image of 3gfj
CRYSTAL STRUCTURE OF THE ST1710 MUTANT (R89A) PROTEIN
分子名称:146aa long hypothetical transcriptional regulator, CALCIUM ION
著者Kumarevel, T., Tanaka, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-27
公開日2009-08-25
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3GFL
  • Download 3gfl
  • View 3gfl
Molmil generated image of 3gfl
CRYSTAL STRUCTURE OF THE ST1710 MUTANT (R90A) PROTEIN
分子名称:146aa long hypothetical transcriptional regulator, CALCIUM ION
著者Kumarevel, T., Tanaka, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-27
公開日2009-08-25
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3GFM
  • Download 3gfm
  • View 3gfm
Molmil generated image of 3gfm
CRYSTAL STRUCTURE OF THE ST1710 MUTANT (K91A) PROTEIN
分子名称:146aa long hypothetical transcriptional regulator, CALCIUM ION
著者Kumarevel, T., Tanaka, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-27
公開日2009-08-25
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3VQV
  • Download 3vqv
  • View 3vqv
Molmil generated image of 3vqv
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH AMPPNP (RE-REFINED)
分子名称:Pyrrolysine--tRNA ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION
著者Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2012-04-01
公開日2013-01-02
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
1FL0
  • Download 1fl0
  • View 1fl0
Molmil generated image of 1fl0
CRYSTAL STRUCTURE OF THE EMAP2/RNA-BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX
分子名称:ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II
著者Renault, L., Kerjan, P., Pasqualato, S., Menetrey, J., Robinson, J.-C., Kawaguchi, S., Vassylyev, D.G., Yokoyama, S., Mirande, M., Cherfils, J.
登録日2000-08-11
公開日2000-12-06
最終更新日2017-02-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry.
EMBO J., 20, 2001