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1WA9
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BU of 1wa9 by Molmil
Crystal Structure of the PAS repeat region of the Drosophila clock protein PERIOD
Descriptor: PERIOD CIRCADIAN PROTEIN
Authors:Yildiz, O, Doi, M, Yujnovsky, I, Cardone, L, Berndt, A, Hennig, S, Schulze, S, Urbanke, C, Sassone-Corsi, P, Wolf, E.
Deposit date:2004-10-25
Release date:2005-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Crystal Structure and Interactions of the Pas Repeat Region of the Drosophila Clock Protein Period
Mol.Cell, 17, 2005
2J9D
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BU of 2j9d by Molmil
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
Descriptor: ACETATE ION, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Yildiz, O, Kalthoff, C, Raunser, S, Kuehlbrandt, W.
Deposit date:2006-11-07
Release date:2007-01-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Glnk1 with Bound Effectors Indicates Regulatory Mechanism for Ammonia Uptake.
Embo J., 26, 2007
2IWV
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BU of 2iwv by Molmil
Structure of the monomeric outer membrane porin OmpG in the open and closed conformation
Descriptor: CALCIUM ION, LAURYL DIMETHYLAMINE-N-OXIDE, OUTER MEMBRANE PROTEIN G, ...
Authors:Yildiz, O, Vinothkumar, K.R, Goswami, P, Kuehlbrandt, W.
Deposit date:2006-07-04
Release date:2006-08-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
Embo J., 25, 2006
2IWW
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BU of 2iww by Molmil
Structure of the monomeric outer membrane porin OmpG in the open and closed conformation
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, OUTER MEMBRANE PROTEIN G, beta-D-glucopyranose, ...
Authors:Yildiz, O, Vinothkumar, K.R, Goswami, P, Kuehlbrandt, W.
Deposit date:2006-07-05
Release date:2006-08-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
Embo J., 25, 2006
2J9C
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BU of 2j9c by Molmil
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yildiz, O, Kalthoff, C, Raunser, S, Kuehlbrandt, W.
Deposit date:2006-11-07
Release date:2007-01-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of Glnk1 with Bound Effectors Indicates Regulatory Mechanism for Ammonia Uptake.
Embo J., 26, 2007
2J9E
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BU of 2j9e by Molmil
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
Descriptor: 2-OXOGLUTARIC ACID, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yildiz, O, Kalthoff, C, Raunser, S, Kuehlbrandt, W.
Deposit date:2006-11-07
Release date:2007-01-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structure of Glnk1 with Bound Effectors Indicates Regulatory Mechanism for Ammonia Uptake.
Embo J., 26, 2007
7POW
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BU of 7pow by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in transition state.
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2-amino-3-[[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl]oxy-[(2R)-2,3-bis[[(Z)-octadec-9-enoyl]oxy]propoxy]-dihydroxy-lambda^5-phosphanyl]oxy-propanoic acid, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, ...
Authors:Yildiz, O, Centola, M.
Deposit date:2021-09-10
Release date:2021-12-08
Last modified:2023-03-01
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
3GEC
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BU of 3gec by Molmil
Crystal structure of a tandem PAS domain fragment of Drosophila PERIOD
Descriptor: Period circadian protein
Authors:Yildiz, O, Wolf, E.
Deposit date:2009-02-25
Release date:2009-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural and functional analyses of PAS domain interactions of the clock proteins Drosophila PERIOD and mouse PERIOD2
Plos Biol., 7, 2009
6F36
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BU of 6f36 by Molmil
Polytomella Fo model
Descriptor: Mitochondrial ATP synthase subunit 6, Mitochondrial ATP synthase subunit ASA6, Mitochondrial ATP synthase subunit c
Authors:Yildiz, O, Kuehlbrandt, W, Klusch, N, Murphy, B.J, Mills, D.J.
Deposit date:2017-11-28
Release date:2017-12-20
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of proton translocation and force generation in mitochondrial ATP synthase.
Elife, 6, 2017
7B1K
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BU of 7b1k by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with bound citrate.
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CALCIUM ION, ...
Authors:Yildiz, O, Centola, M.
Deposit date:2020-11-25
Release date:2021-12-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
7B1L
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BU of 7b1l by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with bound citrate.
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CALCIUM ION, ...
Authors:Yildiz, O, Centola, M.
Deposit date:2020-11-25
Release date:2021-12-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
7B1N
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BU of 7b1n by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with bound citrate.
Descriptor: 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CALCIUM ION, CDP-diacylglycerol--serine O-phosphatidyltransferase, ...
Authors:Yildiz, O, Centola, M.
Deposit date:2020-11-25
Release date:2021-12-08
Last modified:2022-10-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
5A1S
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BU of 5a1s by Molmil
Crystal structure of the sodium-dependent citrate symporter SeCitS form Salmonella enterica.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, CITRATE ANION, ...
Authors:Woehlert, D, Groetzinger, M.J, Kuhlbrandt, W, Yildiz, O.
Deposit date:2015-05-05
Release date:2016-02-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of Na(+)-dependent citrate transport from the structure of an asymmetrical CitS dimer.
Elife, 4, 2015
3DDC
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BU of 3ddc by Molmil
Crystal Structure of NORE1A in Complex with RAS
Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Stieglitz, B, Bee, C, Schwarz, D, Yildiz, O, Moshnikova, A, Khokhlatchev, A, Herrmann, C.
Deposit date:2008-06-05
Release date:2008-07-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II
Embo J., 27, 2008
4V1F
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BU of 4v1f by Molmil
Crystal structure of a mycobacterial ATP synthase rotor ring in complex with Bedaquiline
Descriptor: Bedaquiline, F0F1 ATP SYNTHASE SUBUNIT C, octyl beta-D-glucopyranoside
Authors:Preiss, L, Yildiz, O, Meier, T.
Deposit date:2014-09-26
Release date:2015-05-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline.
Sci Adv, 1, 2015
4V1G
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BU of 4v1g by Molmil
Crystal structure of a mycobacterial ATP synthase rotor ring
Descriptor: F0F1 ATP SYNTHASE SUBUNIT C, octyl beta-D-glucopyranoside
Authors:Preiss, L, Yildiz, O, Meier, T.
Deposit date:2014-09-26
Release date:2015-05-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of the Mycobacterial ATP Synthase Fo Rotor Ring in Complex with the Anti-Tb Drug Bedaquiline.
Sci.Adv., 1, 2015
4V1H
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BU of 4v1h by Molmil
Crystal structure of a mycobacterial ATP synthase rotor ring in complex with Iodo-Bedaquiline
Descriptor: F0F1 ATP SYNTHASE SUBUNIT C, IODO-BEDAQUILINE, TRIS(HYDROXYETHYL)AMINOMETHANE
Authors:Preiss, L, Yildiz, O, Meier, T.
Deposit date:2014-09-26
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Mycobacterial ATP Synthase Fo Rotor Ring in Complex with Iodo-Bedaquiline
To be Published
5LY6
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BU of 5ly6 by Molmil
CryoEM structure of the membrane pore complex of Pneumolysin at 4.5A
Descriptor: Pneumolysin
Authors:van Pee, K, Neuhaus, A, D'Imprima, E, Mills, D.J, Kuehlbrandt, W, Yildiz, O.
Deposit date:2016-09-24
Release date:2017-04-05
Last modified:2019-10-02
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin.
Elife, 6, 2017
5LI3
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BU of 5li3 by Molmil
Crystal structure of HDAC-like protein from P. aeruginosa in complex with a photo-switchable inhibitor.
Descriptor: (2E)-N-hydroxy-3-{4-[(E)-(1,3,5-trimethyl-1H-pyrazol-4-yl)diazenyl]phenyl}prop-2-enamide, Acetoin utilization protein, POTASSIUM ION, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-07-14
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
ACS Infect Dis, 3, 2017
5G1A
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BU of 5g1a by Molmil
Bordetella Alcaligenes HDAH bound to PFSAHA
Descriptor: 2,2,3,3,4,4,5,5,6,6,7,7-dodecakis(fluoranyl)-~{N}-oxidanyl-~{N}'-phenyl-octanediamide, DI(HYDROXYETHYL)ETHER, HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-03-24
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The thermodynamic signature of ligand binding to histone deacetylase-like amidohydrolases is most sensitive to the flexibility in the L2-loop lining the active site pocket.
Biochim. Biophys. Acta, 1861, 2017
5G3W
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BU of 5g3w by Molmil
Structure of HDAC like protein from Bordetella Alcaligenes in complex with the photoswitchable inhibitor CEW65
Descriptor: (2E)-N-hydroxy-3-{4-[(E)-phenyldiazenyl]phenyl}prop-2-enamide, DI(HYDROXYETHYL)ETHER, HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-05-02
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
ACS Infect Dis, 3, 2017
5G1B
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BU of 5g1b by Molmil
Bordetella Alcaligenes HDAH native
Descriptor: DI(HYDROXYETHYL)ETHER, HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE, PENTAETHYLENE GLYCOL, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-03-24
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The thermodynamic signature of ligand binding to histone deacetylase-like amidohydrolases is most sensitive to the flexibility in the L2-loop lining the active site pocket.
Biochim. Biophys. Acta, 1861, 2017
5G1C
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BU of 5g1c by Molmil
Structure of HDAC like protein from Bordetella Alcaligenes bound the photoswitchable pyrazole Inhibitor CEW395
Descriptor: (2E)-N-hydroxy-3-{4-[(E)-(1,3,5-trimethyl-1H-pyrazol-4-yl)diazenyl]phenyl}prop-2-enamide, DI(HYDROXYETHYL)ETHER, HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE, ...
Authors:Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
Deposit date:2016-03-24
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
ACS Infect Dis, 3, 2017
4C7R
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BU of 4c7r by Molmil
Inward facing conformation of the trimeric betaine transporter BetP in complex with lipids
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, CHLORIDE ION, ...
Authors:Koshy, C, Yildiz, O, Ziegler, C.
Deposit date:2013-09-24
Release date:2013-10-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Evidence for Functional Lipid Interactions in the Betaine Transporter Betp
Embo J., 32, 2013
5AOF
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BU of 5aof by Molmil
Crystal structure of pneumolysin deletion mutant Delta146_147.
Descriptor: PNEUMOLYSIN
Authors:van Pee, K, Yildiz, O.
Deposit date:2015-09-10
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin.
Elife, 6, 2017

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