Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3ID6
DownloadVisualize
BU of 3id6 by Molmil
Crystal structure of Sulfolobus solfataricus Nop5 (1-262) and fibrillarin complex
Descriptor: Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, Pre mRNA splicing protein, S-ADENOSYLMETHIONINE
Authors:Ye, K.
Deposit date:2009-07-20
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
3ID5
DownloadVisualize
BU of 3id5 by Molmil
Crystal structure of Sulfolobus solfataricus C/D RNP assembled with Nop5, fibrillarin, L7Ae and a split half C/D RNA
Descriptor: 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, Pre mRNA splicing protein, ...
Authors:Ye, K.
Deposit date:2009-07-20
Release date:2009-08-25
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (4.01 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
3ICX
DownloadVisualize
BU of 3icx by Molmil
Crystal structure of Sulfolobus solfataricus Nop5 (135-380)
Descriptor: Pre mRNA splicing protein, SULFATE ION
Authors:Ye, K.
Deposit date:2009-07-19
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
1L4S
DownloadVisualize
BU of 1l4s by Molmil
Solution structure of ribosome associated factor Y
Descriptor: Protein yfiA
Authors:Ye, K, Serganov, A, Hu, W, Patel, D.J.
Deposit date:2002-03-05
Release date:2002-12-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.
Eur.J.Biochem., 269, 2002
1R9F
DownloadVisualize
BU of 1r9f by Molmil
Crystal structure of p19 complexed with 19-bp small interfering RNA
Descriptor: 5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3', 5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3', Core protein P19, ...
Authors:Ye, K, Malinina, L, Patel, D.J.
Deposit date:2003-10-28
Release date:2004-01-27
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Recognition of small interfering RNA by a viral suppressor of RNA
Nature, 426, 2003
2MQJ
DownloadVisualize
BU of 2mqj by Molmil
Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum
Descriptor: Ubiquitin-like protein
Authors:Ye, K.
Deposit date:2014-06-22
Release date:2015-06-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of ubiquitin-like protein from Caldiarchaeum subterraneum
To be Published
2CWO
DownloadVisualize
BU of 2cwo by Molmil
Crystal structure of RNA silencing suppressor p21 from Beet Yellows Virus
Descriptor: RNA silencing suppressor
Authors:Ye, K, Patel, D.J.
Deposit date:2005-06-22
Release date:2005-10-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:RNA Silencing Suppressor p21 of Beet Yellows Virus Forms an RNA Binding Octameric Ring Structure
STRUCTURE, 13, 2005
3NO7
DownloadVisualize
BU of 3no7 by Molmil
Crystal structure of the centromere-binding protein ParB from plasmid pCXC100
Descriptor: Putative plasmid related protein, SULFATE ION
Authors:Ye, K.
Deposit date:2010-06-24
Release date:2010-12-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure and centromere binding of the plasmid segregation protein ParB from pCXC100
Nucleic Acids Res., 39, 2011
3RNV
DownloadVisualize
BU of 3rnv by Molmil
Structure of the autocatalytic cysteine protease domain of potyvirus helper-component proteinase
Descriptor: Helper component proteinase
Authors:Ye, K.
Deposit date:2011-04-22
Release date:2011-05-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the autocatalytic cysteine protease domain of potyvirus helper-component proteinase
to be published
3HAX
DownloadVisualize
BU of 3hax by Molmil
Crystal structure of a substrate-bound Gar1-minus H/ACA RNP from Pyrococcus furiosus
Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*UP*AP*AP*UP*UP*(FHU)P*GP*AP*CP*UP*CP*AP*A)-3', 50S ribosomal protein L7Ae, ...
Authors:Ye, K.
Deposit date:2009-05-03
Release date:2009-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase.
Mol.Cell, 34, 2009
3HAY
DownloadVisualize
BU of 3hay by Molmil
Crystal structure of a substrate-bound full H/ACA RNP from Pyrococcus furiosus
Descriptor: 5'-R(*AP*UP*AP*AP*UP*UP*(FHU)P*GP*AP*CP*UP*CP*AP*A)-3', 50S ribosomal protein L7Ae, H/ACA RNA, ...
Authors:Ye, K.
Deposit date:2009-05-03
Release date:2009-06-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4.99 Å)
Cite:Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase.
Mol.Cell, 34, 2009
5WTY
DownloadVisualize
BU of 5wty by Molmil
Structure of Nop9 RNA complex
Descriptor: Nucleolar protein 9, RNA (5'-R(*AP*AP*AP*GP*GP*AP*AP*UP*UP*GP*AP*CP*GP*GP*AP*AP*GP*G)-3')
Authors:Ye, K, Wang, B.
Deposit date:2016-12-15
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.785 Å)
Cite:Nop9 binds the central pseudoknot region of 18S rRNA
Nucleic Acids Res., 45, 2017
5WXL
DownloadVisualize
BU of 5wxl by Molmil
Crystal structure of the Rrs1 and Rpf2 complex
Descriptor: Regulator of ribosome biosynthesis, Ribosome biogenesis protein RPF2
Authors:Ye, K, Zheng, S.
Deposit date:2017-01-07
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WTX
DownloadVisualize
BU of 5wtx by Molmil
Structure of Nop9
Descriptor: Nucleolar protein 9
Authors:Ye, K, Wang, B.
Deposit date:2016-12-15
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.074 Å)
Cite:Nop9 binds the central pseudoknot region of 18S rRNA
Nucleic Acids Res., 45, 2017
5WWN
DownloadVisualize
BU of 5wwn by Molmil
Crystal structure of Tsr1
Descriptor: Ribosome biogenesis protein TSR1, SULFATE ION
Authors:Ye, K, Wang, B.
Deposit date:2017-01-03
Release date:2017-06-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WXM
DownloadVisualize
BU of 5wxm by Molmil
Crystal structure of the Imp3 and Mpp10 complex
Descriptor: SULFATE ION, U3 small nucleolar RNA-associated protein MPP10, U3 small nucleolar ribonucleoprotein protein IMP3
Authors:Ye, K, Zheng, S.
Deposit date:2017-01-07
Release date:2017-06-28
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WWM
DownloadVisualize
BU of 5wwm by Molmil
Crystal structure of the TPR domain of Rrp5
Descriptor: SULFATE ION, rRNA biogenesis protein RRP5
Authors:Ye, K, Chen, X.
Deposit date:2017-01-03
Release date:2017-01-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.809 Å)
Cite:Correction: Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WYK
DownloadVisualize
BU of 5wyk by Molmil
Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ...
Authors:Ye, K, Zhu, X, Sun, Q.
Deposit date:2017-01-13
Release date:2017-03-29
Last modified:2017-05-17
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome.
Elife, 6, 2017
5WWO
DownloadVisualize
BU of 5wwo by Molmil
Crystal structure of Enp1
Descriptor: Essential nuclear protein 1, Protein LTV1
Authors:Ye, K, Zhang, W.
Deposit date:2017-01-03
Release date:2017-06-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017
5WYJ
DownloadVisualize
BU of 5wyj by Molmil
Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)
Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ...
Authors:Ye, K, Zhu, X, Sun, Q.
Deposit date:2017-01-13
Release date:2017-03-29
Last modified:2019-10-09
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome.
Elife, 6, 2017
5YDT
DownloadVisualize
BU of 5ydt by Molmil
Remodeled Utp30 in 90S pre-ribosome (Mtr4-depleted, Enp1-TAP)
Descriptor: 5' ETS RNA, Ribosome biogenesis protein UTP30, Saccharomyces cerevisiae strain ALI 308 18S ribosomal RNA gene, ...
Authors:Ye, K, Zhu, X, Hu, J.
Deposit date:2017-09-14
Release date:2017-11-01
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structure and RNA recognition of ribosome assembly factor Utp30.
RNA, 23, 2017
6LLX
DownloadVisualize
BU of 6llx by Molmil
Discovery of A Dual Inhibitor of NQO1 and GSTP1 for Treating Malignant Glioblastoma
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLUTATHIONE, Glutathione S-transferase P
Authors:Ye, K, Li, H, Lei, K.C.
Deposit date:2019-12-24
Release date:2020-11-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:Discovery of a dual inhibitor of NQO1 and GSTP1 for treating glioblastoma.
J Hematol Oncol, 13, 2020
6LLC
DownloadVisualize
BU of 6llc by Molmil
Discovery of A Dual Inhibitor of NQO1 and GSTP1 for Treating Malignant Glioblastoma
Descriptor: 5-methyl-N-(5-nitro-1,3-thiazol-2-yl)-3-phenyl-1,2-oxazole-4-carboxamide, FLAVIN-ADENINE DINUCLEOTIDE, NAD(P)H dehydrogenase [quinone] 1, ...
Authors:Ye, K, Li, H.
Deposit date:2019-12-23
Release date:2020-11-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Discovery of a dual inhibitor of NQO1 and GSTP1 for treating glioblastoma.
J Hematol Oncol, 13, 2020
1SI2
DownloadVisualize
BU of 1si2 by Molmil
Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang
Descriptor: 5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3', Eukaryotic translation initiation factor 2C 1
Authors:Ye, K, Ma, J.B, Patel, D.
Deposit date:2004-02-26
Release date:2004-05-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004
1SI3
DownloadVisualize
BU of 1si3 by Molmil
Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex
Descriptor: 5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3', Eukaryotic translation initiation factor 2C 1
Authors:Ye, K, Ma, J.B, Patel, D.
Deposit date:2004-02-27
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain.
Nature, 429, 2004

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon