Author results

1J1W
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CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH NADP+
Descriptor:Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.
Deposit date:2002-12-19
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+
J.Biol.Chem., 278, 2003
1ITW
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CRYSTAL STRUCTURE OF THE MONOMERIC ISOCITRATE DEHYDROGENASE IN COMPLEX WITH ISOCITRATE AND MN
Descriptor:Isocitrate dehydrogenase, MANGANESE (II) ION, ISOCITRIC ACID
Authors:Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.
Deposit date:2002-02-12
Release date:2002-12-11
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the Monomeric Isocitrate Dehydrogenase: Evidence of a Protein Monomerization by a Domain Duplication
Structure, 10, 2002
1WZZ
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STRUCTURE OF ENDO-BETA-1,4-GLUCANASE CMCAX FROM ACETOBACTER XYLINUM
Descriptor:Probable endoglucanase, SULFATE ION
Authors:Yasutake, Y., Kawano, S., Tajima, K., Yao, M., Satoh, Y., Munekata, M., Tanaka, I., Structural Genomics Consortium (SGC)
Deposit date:2005-03-10
Release date:2006-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis.
Proteins, 64, 2006
2DTD
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STRUCTURE OF THERMOPLASMA ACIDOPHILUM ALDOHEXOSE DEHYDROGENASE (ALDT) IN LIGAND-FREE FORM
Descriptor:Glucose 1-dehydrogenase related protein, SULFATE ION
Authors:Yasutake, Y., Nishiya, Y., Tamura, N., Tamura, T.
Deposit date:2006-07-12
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTE
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STRUCTURE OF THERMOPLASMA ACIDOPHILUM ALDOHEXOSE DEHYDROGENASE (ALDT) IN COMPLEX WITH NADH
Descriptor:Glucose 1-dehydrogenase related protein, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Yasutake, Y., Nishiya, Y., Tamura, N., Tamura, T.
Deposit date:2006-07-12
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTX
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STRUCTURE OF THERMOPLASMA ACIDOPHILUM ALDOHEXOSE DEHYDROGENASE (ALDT) IN COMPLEX WITH D-MANNOSE
Descriptor:Glucose 1-dehydrogenase related protein, BETA-D-MANNOSE, SULFATE ION
Authors:Yasutake, Y., Nishiya, Y., Tamura, N., Tamura, T.
Deposit date:2006-07-18
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2Z36
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CRYSTAL STRUCTURE OF CYTOCHROME P450 MOXA FROM NONOMURAEA RECTICATENA (CYP105)
Descriptor:Cytochrome P450 type compactin 3'',4''-hydroxylase, FE (III) ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Yasutake, Y., Fujii, Y., Fujii, T., Arisawa, A., Tamura, T.
Deposit date:2007-06-02
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Biochem.Biophys.Res.Commun., 361, 2007
3A4G
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STRUCTURE OF CYTOCHROME P450 VDH FROM PSEUDONOCARDIA AUTOTROPHICA (TRIGONAL CRYSTAL FORM)
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, 2-(2-METHOXYETHOXY)ETHANOL
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-07
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A4H
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STRUCTURE OF CYTOCHROME P450 VDH FROM PSEUDONOCARDIA AUTOTROPHICA (ORTHORHOMBIC CRYSTAL FORM)
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, CALCIUM ION
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-07
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A4Z
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STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, CALCIUM ION, ...
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-24
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A50
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STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION WITH BOUND VITAMIN D3
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, (1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL, ...
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-24
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A51
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STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION WITH BOUND 25-HYDROXYVITAMIN D3
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL, ...
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-24
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
4YF9
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STRUCTURE OF N-ACYLHOMOSERINE LACTONE ACYLASE MACQ
Descriptor:Protein related to penicillin acylase
Authors:Yasutake, Y., Kusada, H., Kimura, N.
Deposit date:2015-02-25
Release date:2016-03-02
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
Sci Rep, 7, 2017
4YFA
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STRUCTURE OF N-ACYLHOMOSERINE LACTONE ACYLASE MACQ IN COMPLEX WITH DECANOIC ACID
Descriptor:Protein related to penicillin acylase, DECANOIC ACID
Authors:Yasutake, Y., Kusada, H., Kimura, N.
Deposit date:2015-02-25
Release date:2016-03-02
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
Sci Rep, 7, 2017
4YFB
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STRUCTURE OF N-ACYLHOMOSERINE LACTONE ACYLASE MACQ IN COMPLEX WITH PHENYLACETIC ACID
Descriptor:Protein related to penicillin acylase, 2-PHENYLACETIC ACID, GLYCEROL
Authors:Yasutake, Y., Kusada, H., Kimura, N.
Deposit date:2015-02-25
Release date:2016-03-02
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
Sci Rep, 7, 2017
5C9I
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STRUCTURE OF N-ACYLHOMOSERINE LACTONE ACYLASE MACQ SHORTENED SPACER MUTANT (DELTA202-208) IN UNCLEAVED FORM
Descriptor:Protein related to penicillin acylase, GLYCEROL
Authors:Yasutake, Y., Kusada, H., Kimura, N.
Deposit date:2015-06-27
Release date:2016-06-29
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
Sci Rep, 7, 2017
3B1N
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STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN COMPLEX WITH ADP-MIZORIBINE
Descriptor:Ribokinase, putative, 5-hydroxy-1-(beta-D-ribofuranosyl)-1H-imidazole-4-carboxamide, ...
Authors:Yasutake, Y., Ota, H., Hino, E., Sakasegawa, S., Tamura, T.
Deposit date:2011-07-05
Release date:2011-11-02
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity
Acta Crystallogr.,Sect.D, 67, 2011
3B1O
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STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN LIGAND-FREE FORM
Descriptor:Ribokinase, putative
Authors:Yasutake, Y., Ota, H., Hino, E., Sakasegawa, S., Tamura, T.
Deposit date:2011-07-05
Release date:2011-11-02
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity
Acta Crystallogr.,Sect.D, 67, 2011
3B1P
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STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN COMPLEX WITH ADP-INOSINE
Descriptor:Ribokinase, putative, INOSINE, ...
Authors:Yasutake, Y., Ota, H., Hino, E., Sakasegawa, S., Tamura, T.
Deposit date:2011-07-05
Release date:2011-11-02
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity
Acta Crystallogr.,Sect.D, 67, 2011
3B1Q
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STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN COMPLEX WITH INOSINE
Descriptor:Ribokinase, putative, INOSINE, ...
Authors:Yasutake, Y., Ota, H., Hino, E., Sakasegawa, S., Tamura, T.
Deposit date:2011-07-05
Release date:2011-11-02
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity
Acta Crystallogr.,Sect.D, 67, 2011
3B1R
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STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN COMPLEX WITH AMP-MG-AMP
Descriptor:Ribokinase, putative, ADENOSINE MONOPHOSPHATE, ...
Authors:Yasutake, Y., Ota, H., Hino, E., Sakasegawa, S., Tamura, T.
Deposit date:2011-07-05
Release date:2011-11-02
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of Burkholderia thailandensis nucleoside kinase: implications for the catalytic mechanism and nucleoside selectivity
Acta Crystallogr.,Sect.D, 67, 2011
3VTZ
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STRUCTURE OF THERMOPLASMA VOLCANIUM ALDOHEXOSE DEHYDROGENASE
Descriptor:Glucose 1-dehydrogenase
Authors:Yasutake, Y., Nishioka, T., Tamura, T.
Deposit date:2012-06-12
Release date:2012-07-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Thermoplasma volcanium aldohexose dehydrogenase
To be Published
3VUN
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CRYSTAL STRUCTURE OF A INFLUENZA A VIRUS (A/AICHI/2/1968 H3N2) HEMAGGLUTININ IN C2 SPACE GROUP.
Descriptor:Hemagglutinin HA1 chain, Hemagglutinin HA2 chain, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Yasutake, Y., Suzuki, T., Kawaguchi, A., Nobusawa, E.
Deposit date:2012-07-02
Release date:2012-08-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of a influenza A virus (A/Aichi/2/1968 H3N2) hemagglutinin in C2 space group
To be Published
3WEC
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STRUCTURE OF P450 RAUA (CYP1050A1) COMPLEXED WITH A BIOSYNTHETIC INTERMEDIATE OF AURACHIN RE
Descriptor:Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE, 3-[(2E,6E,9R)-9-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]-2-methylquinolin-4(1H)-one
Authors:Yasutake, Y., Kitagawa, W., Tamura, T.
Deposit date:2013-07-03
Release date:2014-01-01
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structure of the quinoline N-hydroxylating cytochrome P450 RauA, an essential enzyme that confers antibiotic activity on aurachin alkaloids
Febs Lett., 588, 2014
5GNL
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CYTOCHROME P450 VDH (CYP107BR1) F106V MUTANT
Descriptor:Vitamin D(3) 25-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, 2-(2-METHOXYETHOXY)ETHANOL
Authors:Yasutake, Y., Tamura, T.
Deposit date:2016-07-22
Release date:2017-05-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural insights into the mechanism of the drastic changes in enzymatic activity of the cytochrome P450 vitamin D3 hydroxylase (CYP107BR1) caused by a mutation distant from the active site
Acta Crystallogr F Struct Biol Commun, 73, 2017
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